Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0083
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.99 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.0  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 228 YGLIHARYI*PIGALVKCWISSS-LGILDIAHVYTVNANLCCQLVC 362
           YG++HA Y+ P   ++   ++   L       +   + NL C ++C
Sbjct: 252 YGILHATYVIPAVTMMLLTLTVLWLDSRSTERMIAASVNLICHILC 297


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 57   GNEFFCEVDEDYINDKFNLTGLNEQVP 137
            G ++ C+V+    NDK + T L  QVP
Sbjct: 1379 GGDYTCQVENAQGNDKLHYT-LTVQVP 1404


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 57   GNEFFCEVDEDYINDKFNLTGLNEQVP 137
            G ++ C+V+    NDK + T L  QVP
Sbjct: 1375 GGDYTCQVENAQGNDKLHYT-LTVQVP 1400


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 242 CPVHMTNRGISQMLDKFQSGDFGYCPR 322
           CP+++ N  +       Q G FGY  R
Sbjct: 130 CPMNLENFPMDTQRCPLQFGSFGYTKR 156


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 287 YPTFD*CPYWSYVPGMYQSI*YLRCLFHQIRFIW 186
           Y T++  P+WS+V G    +  + C+   + +IW
Sbjct: 519 YLTYE-YPWWSHVLGWLCGLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 287 YPTFD*CPYWSYVPGMYQSI*YLRCLFHQIRFIW 186
           Y T++  P+WS+V G    +  + C+   + +IW
Sbjct: 572 YLTYE-YPWWSHVLGWLCGLSSMLCIPGYMIYIW 604


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -3

Query: 379 FGGDVRQTNWQHRLAFTVYTW 317
           + G   Q  WQ ++ F   TW
Sbjct: 357 WSGFCSQCIWQEKIVFAAVTW 377


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 617 CGGLEFAAA 591
           CGGLEF AA
Sbjct: 285 CGGLEFTAA 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,995
Number of Sequences: 438
Number of extensions: 5255
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)