Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0083
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44680.2 68415.m05561 casein kinase II beta chain, putative s... 118 5e-27
At2g44680.1 68415.m05560 casein kinase II beta chain, putative s... 118 5e-27
At5g47080.2 68418.m05803 casein kinase II beta chain, putative s... 117 9e-27
At5g47080.1 68418.m05802 casein kinase II beta chain, putative s... 117 9e-27
At4g17640.1 68417.m02637 casein kinase II beta chain, putative s... 117 9e-27
At3g60250.1 68416.m06734 casein kinase II beta chain, putative (... 115 3e-26
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 28 7.5
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00... 28 7.5
At1g74440.1 68414.m08624 expressed protein similar to YGL010w-li... 27 9.9
>At2g44680.2 68415.m05561 casein kinase II beta chain, putative
similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:O81275
Length = 282
Score = 118 bits (283), Expect = 5e-27
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDN- 185
S ++ SWI+WFC LRGNEFFCEVDEDYI D FNL GL+ QVP+Y ALD+ILD+E N
Sbjct: 89 SEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNG 148
Query: 186 ----PNESDLVEQASEILYGLIHARYI 254
+ ++VE A+E+LYGLIH RYI
Sbjct: 149 DMFTEEQHEMVESAAEMLYGLIHVRYI 175
Score = 103 bits (248), Expect = 9e-23
Identities = 43/96 (44%), Positives = 66/96 (68%)
Frame = +2
Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
+T +G++ M++K+++ DFG CPRV+C Q LP+G SD+P + VK+YCP+C D+Y P+
Sbjct: 176 LTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDIYYPR- 234
Query: 434 SRHHHTDGAYFGTGFPHMVFMVHPDNDQNDLPLNSY 541
S++ DGAYFGT FPH+ M + N + P +Y
Sbjct: 235 SKYQDIDGAYFGTTFPHLFLMAY-GNMKPQKPAQNY 269
Score = 33.1 bits (72), Expect = 0.20
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +1
Query: 511 RPKRPASQFVPRLYGFKIH 567
+P++PA +VP+++GFK+H
Sbjct: 261 KPQKPAQNYVPKIFGFKVH 279
>At2g44680.1 68415.m05560 casein kinase II beta chain, putative
similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:O81275
Length = 283
Score = 118 bits (283), Expect = 5e-27
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDN- 185
S ++ SWI+WFC LRGNEFFCEVDEDYI D FNL GL+ QVP+Y ALD+ILD+E N
Sbjct: 89 SEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNG 148
Query: 186 ----PNESDLVEQASEILYGLIHARYI 254
+ ++VE A+E+LYGLIH RYI
Sbjct: 149 DMFTEEQHEMVESAAEMLYGLIHVRYI 175
Score = 105 bits (253), Expect = 2e-23
Identities = 43/96 (44%), Positives = 65/96 (67%)
Frame = +2
Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
+T +G++ M++K+++ DFG CPRV+C Q LP+G SD+P + VK+YCP+C D+Y P+S
Sbjct: 176 LTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDIYYPRS 235
Query: 434 SRHHHTDGAYFGTGFPHMVFMVHPDNDQNDLPLNSY 541
+ DGAYFGT FPH+ M + N + P +Y
Sbjct: 236 KYQGNIDGAYFGTTFPHLFLMAY-GNMKPQKPAQNY 270
Score = 33.1 bits (72), Expect = 0.20
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +1
Query: 511 RPKRPASQFVPRLYGFKIH 567
+P++PA +VP+++GFK+H
Sbjct: 262 KPQKPAQNYVPKIFGFKVH 280
>At5g47080.2 68418.m05803 casein kinase II beta chain, putative
similar to casein kinase II beta chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40228
Length = 256
Score = 117 bits (281), Expect = 9e-27
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPD-- 182
S E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+ VP+Y ALD+ILD+E
Sbjct: 94 SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQG 153
Query: 183 ---NPNESDLVEQASEILYGLIHARYI 254
+++L+E A+E+LYGLIHARYI
Sbjct: 154 EMFTEEQNELIESAAEMLYGLIHARYI 180
Score = 87.0 bits (206), Expect = 1e-17
Identities = 33/60 (55%), Positives = 48/60 (80%)
Frame = +2
Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
+T++G++ MLDK+++ DFG CPRVYC QP LP+G SD+P + VK+YCP+C D+Y P+S
Sbjct: 181 LTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIYYPRS 240
>At5g47080.1 68418.m05802 casein kinase II beta chain, putative
similar to casein kinase II beta chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40228
Length = 287
Score = 117 bits (281), Expect = 9e-27
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPD-- 182
S E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+ VP+Y ALD+ILD+E
Sbjct: 94 SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQG 153
Query: 183 ---NPNESDLVEQASEILYGLIHARYI 254
+++L+E A+E+LYGLIHARYI
Sbjct: 154 EMFTEEQNELIESAAEMLYGLIHARYI 180
Score = 112 bits (269), Expect = 3e-25
Identities = 44/83 (53%), Positives = 62/83 (74%)
Frame = +2
Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
+T++G++ MLDK+++ DFG CPRVYC QP LP+G SD+P + VK+YCP+C D+Y P+S
Sbjct: 181 LTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIYYPRS 240
Query: 434 SRHHHTDGAYFGTGFPHMVFMVH 502
+ DGAYFGT FPH+ M +
Sbjct: 241 KYQGNIDGAYFGTTFPHLFLMTY 263
>At4g17640.1 68417.m02637 casein kinase II beta chain, putative
similar to casein kinase II beta' chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40229
Length = 282
Score = 117 bits (281), Expect = 9e-27
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDN- 185
S E+ SWI+WFC LRGNEFFCEVD+DYI D FNL GL+ QVP+Y ALD+ILD+E +
Sbjct: 89 SDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHG 148
Query: 186 ----PNESDLVEQASEILYGLIHARYI 254
+++L+E A+E+LYG+IHAR+I
Sbjct: 149 EMFTEEQNELIESAAEMLYGMIHARFI 175
Score = 113 bits (272), Expect = 1e-25
Identities = 45/83 (54%), Positives = 62/83 (74%)
Frame = +2
Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
+T++G++ MLDK+++ DFG CPRVYC QP LP+G SD+P + VK+YCP+C DVY P+S
Sbjct: 176 LTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVYYPRS 235
Query: 434 SRHHHTDGAYFGTGFPHMVFMVH 502
+ DGAYFGT FPH+ M +
Sbjct: 236 KYQGNIDGAYFGTTFPHLFLMTY 258
>At3g60250.1 68416.m06734 casein kinase II beta chain, putative
(CKB3) similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana SWISS-PROT:O81275
Length = 276
Score = 115 bits (277), Expect = 3e-26
Identities = 51/87 (58%), Positives = 65/87 (74%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDN- 185
S ++ SWI+WFC LRGN+FFCEVDEDYI D FNL GL+ QVP+Y ALD+ILD++ N
Sbjct: 83 SEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNS 142
Query: 186 ----PNESDLVEQASEILYGLIHARYI 254
+ ++VE A+E+LYGLIH RYI
Sbjct: 143 EMFTDEQHEMVESAAEMLYGLIHVRYI 169
Score = 101 bits (242), Expect = 5e-22
Identities = 43/96 (44%), Positives = 63/96 (65%)
Frame = +2
Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
+T +G++ M +K+++ DFG CPRV+C Q LP+G SD+P + VK+YCP+C D+ P+S
Sbjct: 170 LTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDISYPRS 229
Query: 434 SRHHHTDGAYFGTGFPHMVFMVHPDNDQNDLPLNSY 541
+ DGAYFGT FPH+ M + N + P SY
Sbjct: 230 KFQGNIDGAYFGTTFPHLFLMTY-GNLKPQKPTQSY 264
Score = 31.5 bits (68), Expect = 0.61
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +1
Query: 511 RPKRPASQFVPRLYGFKIH 567
+P++P +VP+++GFK+H
Sbjct: 256 KPQKPTQSYVPKIFGFKVH 274
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 392 LYCPRCMDVYTPKSSRHHH 448
+ CP C V P SS HHH
Sbjct: 235 IMCPSCERVGGPSSSNHHH 253
>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 568
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 300 PDWNLSNI*LMPLLVICTGHVSIHIVSPM 214
P W L+ LL I T HVS+H+V P+
Sbjct: 208 PFWMLAFSDRKNLLNIVTSHVSLHVVEPL 236
>At1g74440.1 68414.m08624 expressed protein similar to YGL010w-like
protein GB:AAC32136 [Picea mariana]
Length = 208
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 279 CWISSSLGILDIAHVYTVNANLCCQLVCRT 368
CWI SS + H T+ + QL+C T
Sbjct: 103 CWIGSSFLAARLGHSLTLKVGVASQLLCWT 132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,481
Number of Sequences: 28952
Number of extensions: 392101
Number of successful extensions: 1093
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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