Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0082
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    26   5.3  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    26   5.3  

>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 577 RSRPRYESYFNSSSQKTF 524
           R RP Y S F+ SSQ TF
Sbjct: 492 RKRPGYSSSFDGSSQSTF 509


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -2

Query: 510 LNKDWVLNEFNLIY*IKHCDDM*IQTFVVFPNNNYICIFLAHKYRLYI--CLYCVIVFYI 337
           L K W+L   NL   + H + +  +T ++     +  +   HK   +I    Y ++ F +
Sbjct: 71  LGKKWLLFLANLPLLVFHANQVIHKTHILDATEIFRQLG-RHKRDNFIKVTFYLIMFFTL 129

Query: 336 YYCTIVSLVQ 307
            YC ++SL+Q
Sbjct: 130 LYCMVMSLIQ 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,327
Number of Sequences: 5004
Number of extensions: 40455
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)