Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0082
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0127 + 1031690-1031952,1032850-1032857,1034679-1034927,103...    29   4.2  
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    28   9.6  

>11_01_0127 +
           1031690-1031952,1032850-1032857,1034679-1034927,
           1034938-1035009,1036609-1036724,1037482-1037545,
           1037742-1037773,1037804-1037850,1038627-1038660,
           1039308-1039652,1040425-1040718,1040968-1041232,
           1041359-1041480,1041754-1042059
          Length = 738

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 570 GRATKATLIPHRRKRSG 520
           GRAT+A  +PHRR+R G
Sbjct: 45  GRATRAEALPHRRRRLG 61


>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 429 VVFPNNNYICIFLAHKYRLYICLYCVIVFYIYYCTIVSLVQPLSTYDRTT*NYRT 265
           V+ P       +L HK  L+  L+ ++ F  Y      +V  ++ Y+RT  N+ T
Sbjct: 323 VLVPLGAIAARYLRHKDPLWYYLHVLVQFLGYIIGFAGVVSGIALYNRTYSNFTT 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,281
Number of Sequences: 37544
Number of extensions: 216084
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)