Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0082
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              30   2.4  
SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -2

Query: 408 YICIFLAHKYRLYICLYCVIVFYI--YYC 328
           Y C +  + Y  Y C YC   +Y   YYC
Sbjct: 486 YYCYYYCYCYCYYCCYYCYCYYYYHHYYC 514


>SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 561 TKATLIPHRRKRSGIFSLNKDWVLNEFN 478
           T++ + P   K SG   ++KDW +NE N
Sbjct: 182 TRSNITPGEHKGSGTVVMDKDWYINECN 209


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 405 ICIFLAHKYRLYICLYCVIVFYIYYCTIVSLVQPLS 298
           +C+ L+ +Y L + ++C +   ++YC  V++   LS
Sbjct: 332 VCLLLSVRYCLSVTVHCCLSVTVHYCLSVTVHYCLS 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,684
Number of Sequences: 59808
Number of extensions: 287721
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)