Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0081
(698 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 104 2e-21
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 93 6e-18
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 88 2e-16
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 87 3e-16
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 83 8e-15
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 81 3e-14
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 78 2e-13
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 77 4e-13
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 71 2e-11
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 69 8e-11
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 69 1e-10
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 63 6e-09
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 60 7e-08
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 59 9e-08
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 56 8e-07
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 56 1e-06
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 54 3e-06
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 50 4e-05
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 39 0.10
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 38 0.24
UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1; She... 35 1.7
UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3; Sophophora|... 34 2.9
UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=... 34 2.9
UniRef50_A6GTV9 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_Q5FU87 Cluster: 1-Acyl-sn-glycerol-3-phosphate acyltran... 33 6.7
UniRef50_A3SK38 Cluster: Putative ABC transport system, permease... 33 8.9
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 33 8.9
UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putati... 33 8.9
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 104 bits (249), Expect = 2e-21
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
R AG++ ARTIGI+VDPRRRNKS ESLQ NVQR+KEYR++LILFP K KG+++
Sbjct: 82 RVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSA 141
Query: 432 EERKLATQLRGPLMPVQQPAPKSVASLSLKMKRTSK 539
EE KLATQL GP+MPV+ K A + + ++ K
Sbjct: 142 EELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFK 177
Score = 101 bits (242), Expect = 2e-20
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 207
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RPIVRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 208 YHTKVRAGRGFTLREI 255
YHTKVRAGRGF+L E+
Sbjct: 66 YHTKVRAGRGFSLEEL 81
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +2
Query: 512 ITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 640
ITE+EKNFKA+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 169 ITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 93.1 bits (221), Expect = 6e-18
Identities = 43/80 (53%), Positives = 52/80 (65%)
Frame = +1
Query: 16 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 195
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALR-AKKSRQLAPKPTELLRPLVHC 59
Query: 196 PTVRYHTKVRAGRGFTLREI 255
P+ RY +KVRAGRGFT +E+
Sbjct: 60 PSERYKSKVRAGRGFTFQEL 79
Score = 64.1 bits (149), Expect = 3e-09
Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGK-KVLK 416
+ AG++ +AR+ G+AVDPRRRN+ ES+ N+QR+ EY++RLI P K KVLK
Sbjct: 80 KQAGMSDKYARSFGVAVDPRRRNRCTESIAANIQRLIEYKSRLIFLPDSKNKVLK 134
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 87.8 bits (208), Expect = 2e-16
Identities = 39/78 (50%), Positives = 50/78 (64%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 202 VRYHTKVRAGRGFTLREI 255
+RY+TK+R+GRGFT+ E+
Sbjct: 63 LRYNTKIRSGRGFTIEEV 80
Score = 66.9 bits (156), Expect = 4e-10
Identities = 30/48 (62%), Positives = 40/48 (83%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 398
+AAGL +AR++GI VD RRRNKS ESL++NV+RIK Y+ARL++ PK
Sbjct: 81 KAAGLGKKYARSVGIPVDHRRRNKSEESLKLNVERIKAYQARLVVIPK 128
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/78 (50%), Positives = 50/78 (64%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 202 VRYHTKVRAGRGFTLREI 255
++Y+ KVRAG+GFTL E+
Sbjct: 62 LKYNMKVRAGKGFTLEEL 79
Score = 76.6 bits (180), Expect = 6e-13
Identities = 36/76 (47%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
+ AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + ++V G++
Sbjct: 80 KVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTP 139
Query: 432 EERKLATQLRGPLMPV 479
EE ATQ++G MP+
Sbjct: 140 EELANATQVQGDYMPI 155
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 82.6 bits (195), Expect = 8e-15
Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
+AAG+ P +ARTIGI VD RR+NKS E + INVQR+K Y ++L+LFP KK KG+A E
Sbjct: 97 KAAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDATE 156
Query: 432 EERKLATQLR 461
EE K ATQ R
Sbjct: 157 EEVKAATQDR 166
Score = 67.3 bits (157), Expect = 3e-10
Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +1
Query: 16 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXL 177
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 178 RPIVRCPTVRYHTKVRAGRGFTLREI 255
RP V CPTVRY+ K R GRGF+L E+
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEEL 96
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 80.6 bits (190), Expect = 3e-14
Identities = 39/82 (47%), Positives = 47/82 (57%)
Frame = +1
Query: 10 VKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIV 189
++M NN IPN H K W VKT+F+ PAR RR+ R LRPIV
Sbjct: 20 LEMVAKNNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIV 79
Query: 190 RCPTVRYHTKVRAGRGFTLREI 255
RCPTVRY+ K R GRGFT +E+
Sbjct: 80 RCPTVRYNMKTRLGRGFTPKEL 101
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +3
Query: 258 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKV 410
AAG +P AR GIAVD RR + ++ NV+R++ Y+ARLI KG+ V
Sbjct: 103 AAGFDPALARFQGIAVDARRAHSKDAMVKQNVERLQAYKARLIKVKKGETV 153
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 78.2 bits (184), Expect = 2e-13
Identities = 36/76 (47%), Positives = 48/76 (63%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 207
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRPIV PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 208 YHTKVRAGRGFTLREI 255
Y+ K R GRGFTL E+
Sbjct: 63 YNMKTRLGRGFTLEEL 78
Score = 54.0 bits (124), Expect = 3e-06
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +3
Query: 258 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEA 425
A G+N A +IGIAVD RR + S E+ QINV R+K+Y ++L P KGKK KG A
Sbjct: 80 ACGINKKAAMSIGIAVDHRRTDLSEETFQINVDRLKKYINGIVLQPRKGKKTKKGFA 136
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 77.0 bits (181), Expect = 4e-13
Identities = 34/68 (50%), Positives = 46/68 (67%)
Frame = +1
Query: 52 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 231
FHKDWQR V+ F+QP R++RR++ R+ LRP+VRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 232 RGFTLREI 255
RGFTL E+
Sbjct: 90 RGFTLAEL 97
Score = 59.7 bits (138), Expect = 7e-08
Identities = 29/48 (60%), Positives = 36/48 (75%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 398
+ AG+ ART+GIAVD RR N S ESL NV R+K+Y+ARLILFP+
Sbjct: 98 KEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPR 145
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 71.3 bits (167), Expect = 2e-11
Identities = 44/118 (37%), Positives = 59/118 (50%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 207
NN++PN H HK WQR+V+ FN+ +R +R+ R L P+V CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 208 YHTKVRAGRGFTLREIGPQD*TQYLPERLELL*IPVDATSLLNHCKSMFKE*RNTERV 381
Y+ K R G+GFTL EI + P + I VD N C+ KE N ER+
Sbjct: 64 YNYKTRLGKGFTLEEIKA---VKLTPSAARSIGIIVDKRR-KNRCEESLKE--NAERL 115
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGK 404
+A L P AR+IGI VD RR+N+ ESL+ N +R+++Y L++ P K
Sbjct: 80 KAVKLTPSAARSIGIIVDKRRKNRCEESLKENAERLQKYLNSLVMIPLKK 129
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 69.3 bits (162), Expect = 8e-11
Identities = 36/82 (43%), Positives = 54/82 (65%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEE 434
+A G+ P +ARTIGI+VD RR+NKS E+ NV R++EY+++L++F K K + + E+
Sbjct: 81 KAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQ 140
Query: 435 ERKLATQLRGPLMPVQQPAPKS 500
AT PV+QPAP+S
Sbjct: 141 VDVSAT------FPVEQPAPES 156
Score = 67.7 bits (158), Expect = 3e-10
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +1
Query: 43 NGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 222
N HF K WQ V+ F+Q ++ R+Q+R+ LRP+VR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 223 RAGRGFTLREI 255
RAGRGFTL E+
Sbjct: 70 RAGRGFTLAEL 80
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/78 (42%), Positives = 46/78 (58%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
K N +PN H K W RFVKT++NQPA + RR+Q R LRP+VR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 202 VRYHTKVRAGRGFTLREI 255
++Y++ + GRGF+L E+
Sbjct: 61 IKYNSVQKLGRGFSLIEL 78
Score = 63.3 bits (147), Expect = 6e-09
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK--GKK---VLKG 419
+ AGLN FART+GI+VD RRRN + E L NV+R+K Y ++L+L+P+ GK V+K
Sbjct: 79 KEAGLNAAFARTVGISVDHRRRNLNQEELNNNVKRLKAYLSKLVLYPRVAGKPKNGVVKD 138
Query: 420 EANEEERKLATQLRGPLMPVQQPAPK 497
NE Q P + Q PK
Sbjct: 139 STNEVVAHPVAQNTNPEVLTFQRTPK 164
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 63.3 bits (147), Expect = 6e-09
Identities = 29/57 (50%), Positives = 39/57 (68%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA 425
+ AGL AR++G+AVD RR NK ESL +NV R+K Y ++L+LFP+ K KG A
Sbjct: 80 KVAGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYLSKLVLFPRKKHAKKGFA 136
Score = 54.0 bits (124), Expect = 3e-06
Identities = 32/80 (40%), Positives = 43/80 (53%)
Frame = +1
Query: 16 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 195
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 196 PTVRYHTKVRAGRGFTLREI 255
P+ RY+ K+R GRGFTL+E+
Sbjct: 60 PSRRYNYKLRFGRGFTLQEL 79
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 59.7 bits (138), Expect = 7e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +1
Query: 37 IPNGHFHKDWQRFVKTWFNQPARRYRRK 120
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 59.3 bits (137), Expect = 9e-08
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 46 GHFHKDWQRFVKTWFNQPARRY-RRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 222
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 223 RAGRGFTLREI 255
+ GRGF+++EI
Sbjct: 70 KLGRGFSIQEI 80
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 56.0 bits (129), Expect = 8e-07
Identities = 27/68 (39%), Positives = 37/68 (54%)
Frame = +1
Query: 52 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 231
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRV-EKAKSVFPATIKSLKPSVHCMNQRFNYKLRLG 70
Query: 232 RGFTLREI 255
RGF+L+E+
Sbjct: 71 RGFSLKEL 78
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVL 413
RAA ++ ARTIGIAVDPRR+ S E L N QR+ EY RL L K++
Sbjct: 79 RAAKIDKNLARTIGIAVDPRRKESSKECLTRNAQRLTEYMNRLCLKSVSVKIV 131
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 55.6 bits (128), Expect = 1e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +1
Query: 175 LRPIVRCPTVRYHTKVRAGRGFTLREI 255
+RPIVRCPTVRYHTKVR GRGF+L EI
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEI 39
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +3
Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEE 434
R AG++ ARTI I+VDP+++ K E + +R+ E + I++PK +K + + +E
Sbjct: 40 RLAGIHKKMARTIDISVDPKKKKKKKERKKEKNERVTETNQKDIIYPKREKEREKKGMKE 99
Query: 435 ERK 443
+K
Sbjct: 100 GKK 102
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 54.0 bits (124), Expect = 3e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRYRR 117
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/77 (35%), Positives = 36/77 (46%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
KGN+ +PN HF K + + P + R + LRPIVRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 202 VRYHTKVRAGRGFTLRE 252
++Y+ R GRGFT E
Sbjct: 60 IKYNRNERLGRGFTAAE 76
Score = 45.6 bits (103), Expect = 0.001
Identities = 33/85 (38%), Positives = 47/85 (55%)
Frame = +3
Query: 261 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEER 440
AGL+ AR +GIAVD RRR+ + E+ NV+RIK Y ++ ++ K EA E
Sbjct: 80 AGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGKITIYESVK-----EARESGA 134
Query: 441 KLATQLRGPLMPVQQPAPKSVASLS 515
K T+ +MP +P P V S+S
Sbjct: 135 KPYTK---EIMPFVKPKP-VVGSIS 155
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 39.1 bits (87), Expect = 0.10
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -1
Query: 251 SRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 153
S V P P R L YR VG TIGR+ PA GRG
Sbjct: 411 SSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 37.9 bits (84), Expect = 0.24
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 181 PIVRCPTVRYHTKVRAGRGFTLREI 255
PIV+C T++Y+ K RAGRGF L E+
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEEL 71
>UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Diguanylate cyclase
precursor - Shewanella sediminis HAW-EB3
Length = 467
Score = 35.1 bits (77), Expect = 1.7
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = -1
Query: 428 IGLTLQHLFAFREQYKTRSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPIS 249
+G +L ++ R+ +R+ L LN++LQ + + TGIY NR +Y+++S
Sbjct: 273 LGFSLLYILQLRKTVSSRTAELRQLNLELQHLASIDSLTGIY---NR--RYFIRSLKDAC 327
Query: 248 RRVNPLPARTLVWYRTVGHRTIGRN 174
R +N + TL+ + +TI N
Sbjct: 328 RTMNEEASLTLLLFDIDKFKTINDN 352
>UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3;
Sophophora|Rep: CG17608-PA, isoform A - Drosophila
melanogaster (Fruit fly)
Length = 271
Score = 34.3 bits (75), Expect = 2.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 VDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA---NEEERKLATQLRGPLM 473
+D R+ S+ SLQ + I+E +L+LFP+G + K + +A Q + P+
Sbjct: 141 IDRSRKTDSINSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ 200
Query: 474 PV 479
PV
Sbjct: 201 PV 202
>UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=2;
Culicidae|Rep: Mixed-lineage leukemia protein, mll -
Aedes aegypti (Yellowfever mosquito)
Length = 2874
Score = 34.3 bits (75), Expect = 2.9
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 384 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAP-KSVASLSLKMKRTSKLI 545
I FP G +V+K E+NEE++ + + P++P+ P P + +SL R+ LI
Sbjct: 2016 IHFP-GLRVIKEESNEEDQTMIFKRMSPIIPIVAPIPIRLKKGISLSSDRSLSLI 2069
>UniRef50_A6GTV9 Cluster: Putative uncharacterized protein; n=1;
Limnobacter sp. MED105|Rep: Putative uncharacterized
protein - Limnobacter sp. MED105
Length = 130
Score = 33.9 bits (74), Expect = 3.9
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = -1
Query: 377 RSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGK---YWVQSCGPISRRVN 237
R+ L ++N+++ N++ A T + + R+GK YWV + G + ++VN
Sbjct: 63 RTTLLNAVNLNISRLNKVCADTHVGNREKRNGKGGQYWVNALGGMLKKVN 112
>UniRef50_Q5FU87 Cluster: 1-Acyl-sn-glycerol-3-phosphate
acyltransferase; n=1; Gluconobacter oxydans|Rep:
1-Acyl-sn-glycerol-3-phosphate acyltransferase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 250
Score = 33.1 bits (72), Expect = 6.7
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +3
Query: 237 IHSS*NRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 416
I S R + P+ T IA+D + +K++ ++ + + ++I+FP+G + L
Sbjct: 99 IKSELTRIPVVGPMLLLTGMIAIDRKAGSKALRNMMRDTKAAHADDRQIIIFPEGTRTLP 158
Query: 417 GEANEEER---KLATQLRGPLMPV 479
GE + + LA Q P++PV
Sbjct: 159 GERHPIQPGIVALARQTDVPIVPV 182
>UniRef50_A3SK38 Cluster: Putative ABC transport system, permease
protein; n=1; Roseovarius nubinhibens ISM|Rep: Putative
ABC transport system, permease protein - Roseovarius
nubinhibens ISM
Length = 287
Score = 32.7 bits (71), Expect = 8.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 690 FFLFIHFLGFTSLAVGAFVTSSGFSAASFNLLARIPTSLAMERAPL 553
F L L F + A+G ++T F+A +FN+ +P LA A L
Sbjct: 23 FSLLFGILKFPNFAIGGYITVGAFAAYTFNVPLGLPLPLAAAAAML 68
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 32.7 bits (71), Expect = 8.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 175 LRPIVRCPTVRYHTKVRAGRGFTLREI 255
LRP+V T++Y+ KV +GFTL E+
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEEL 78
>UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putative;
n=6; Plasmodium|Rep: Nucleolar GTP-binding protein 1,
putative - Plasmodium chabaudi
Length = 682
Score = 32.7 bits (71), Expect = 8.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 306 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEAN 428
DP R+ + +S +QR K Y+ ++ + + KK KGEA+
Sbjct: 618 DPTRKMRIYQSTSTEIQRKKAYKLNIVAYRQIKKGTKGEAD 658
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,783,587
Number of Sequences: 1657284
Number of extensions: 13199615
Number of successful extensions: 34930
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 33982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34907
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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