Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0081
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...    97   2e-20
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...    97   2e-20
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003...    29   4.7  
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559...    29   4.7  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    28   6.2  
10_08_0694 - 19929918-19930292,19930633-19930866                       28   8.2  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/80 (55%), Positives = 53/80 (66%)
 Frame = +1

Query: 16  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 195
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRPIV+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 196 PTVRYHTKVRAGRGFTLREI 255
            T++Y+ K RAGRGFTL E+
Sbjct: 61  QTLKYNMKSRAGRGFTLEEL 80



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
           +AAG+   FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV  G++  
Sbjct: 81  KAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTP 140

Query: 432 EERKLATQLRGPLMPVQQPAPKSV 503
           EE   ATQ++G  MP+ +   +SV
Sbjct: 141 EELATATQVQGDYMPITRGEKRSV 164



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 512 ITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 613
           +T+D K FKAY  LR  R   + +G R KR  +A
Sbjct: 169 VTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/80 (55%), Positives = 53/80 (66%)
 Frame = +1

Query: 16  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 195
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRPIV+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 196 PTVRYHTKVRAGRGFTLREI 255
            T++Y+ K RAGRGFTL E+
Sbjct: 61  QTLKYNMKSRAGRGFTLEEL 80



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/84 (47%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
           +AAG+   +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV  G++  
Sbjct: 81  KAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTA 140

Query: 432 EERKLATQLRGPLMPVQQPAPKSV 503
           EE   ATQ++G  MP+ +   +SV
Sbjct: 141 EELATATQVQGDYMPIARGEKRSV 164


>06_03_0711 +
           23798998-23799106,23799838-23799957,23800181-23800317,
           23800418-23800579,23800707-23800793,23800872-23800958,
           23801317-23801454,23802023-23802214,23802287-23802385,
           23802490-23802564
          Length = 401

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 309 DLQQFQSFGQILGSILRP 256
           DL+  QS GQI+G +LRP
Sbjct: 54  DLKSLQSVGQIIGEVLRP 71


>02_01_0754 -
           5595813-5595887,5595973-5596071,5596136-5596327,
           5596992-5597129,5597415-5597501,5597583-5597669,
           5597795-5597956,5598089-5598225,5598483-5598602,
           5600668-5600773
          Length = 400

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 309 DLQQFQSFGQILGSILRP 256
           DL+  QS GQI+G +LRP
Sbjct: 53  DLKSLQSVGQIIGEVLRP 70


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 330 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 458
           ++SL+  VQR+ E R R +L P G        ++E R  A  +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224


>10_08_0694 - 19929918-19930292,19930633-19930866
          Length = 202

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 315 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 485
           R N   + + + +   K     LI+ P G +VL+G   E++ K A ++   L  +++
Sbjct: 54  RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,021
Number of Sequences: 37544
Number of extensions: 362487
Number of successful extensions: 888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)