Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0081
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    90   2e-18
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    90   2e-18
Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U00048-10|AAB53823.2|  852|Caenorhabditis elegans Related to yea...    29   3.2  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical ...    29   4.2  
AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical ...    29   4.2  
AL132949-21|CAB61098.1|  866|Caenorhabditis elegans Hypothetical...    28   5.6  
U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered averme...    28   7.4  
U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amin...    28   7.4  
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 38/78 (48%), Positives = 50/78 (64%)
 Frame = +1

Query: 22  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 202 VRYHTKVRAGRGFTLREI 255
            RY+TK R GRGF+L+E+
Sbjct: 64  KRYNTKTRLGRGFSLQEL 81


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 38/78 (48%), Positives = 50/78 (64%)
 Frame = +1

Query: 22  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 202 VRYHTKVRAGRGFTLREI 255
            RY+TK R GRGF+L+E+
Sbjct: 64  KRYNTKTRLGRGFSLQEL 81



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
           +AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+LILFP K     KG+++ 
Sbjct: 82  KAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSA 141

Query: 432 EERKLATQLRGPLMPV 479
           EE K+A QLRG ++P+
Sbjct: 142 EELKVAAQLRGDVLPL 157


>Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical
           protein M7.13 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 303 QQFQSFGQILGSILRPYFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSI 124
           +QF  + Q++G ++  +   S  ST  YF  V   +  +  T + S RT +     LYS+
Sbjct: 199 KQFIVYEQVVGIVVNSFIITSSLSTAVYFG-VKTYYKINELTNKVSLRTSNLQSQLLYSL 257

Query: 123 LLSAV 109
           ++  +
Sbjct: 258 VVQTM 262


>U00048-10|AAB53823.2|  852|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 16 protein.
          Length = 852

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 269 QSCGPISRRVNPLPARTLVWYRTVGHRTIGRN 174
           Q  GPI+   +P PA   +W RT+  R + R+
Sbjct: 55  QFSGPIAVAYSPRPASWYIWIRTISGRILKRD 86


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -1

Query: 158 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 69
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 432 EERKLATQLRGPL--MPVQQPAPKSVASLSLKMKRTSKLINT*EELAPLPNSS 584
           EE+KLA +L   L  + V++P  K   S   K K++  + +T E LA +  S+
Sbjct: 90  EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142


>AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 432 EERKLATQLRGPL--MPVQQPAPKSVASLSLKMKRTSKLINT*EELAPLPNSS 584
           EE+KLA +L   L  + V++P  K   S   K K++  + +T E LA +  S+
Sbjct: 90  EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142


>AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical
           protein Y81G3A.1 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 432 EERKLATQLRGPL--MPVQQPAPKSVASLSLKMKRTSKLINT*EELAPLPNSS 584
           EE+KLA +L   L  + V++P  K   S   K K++  + +T E LA +  S+
Sbjct: 90  EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142


>AL132949-21|CAB61098.1|  866|Caenorhabditis elegans Hypothetical
            protein Y53F4B.24 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
 Frame = +3

Query: 198  NCSVPY*STRR*RIHSS*NRAAG-LNPVFARTIGIAVDPRRRNKSVESLQINVQR----- 359
            NCS+ Y  T R + + + NR++  + P F  TI  A     R   +ES Q + Q      
Sbjct: 715  NCSMNY-YTHRVQQNINSNRSSTCIAPTFRSTISRASVISLRQNLLESHQAHAQNAPALP 773

Query: 360  -------IKEYRARLILFPK----GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVA 506
                   I++   R+    K     K   K E +E+ R    ++  P +PVQQ   + + 
Sbjct: 774  QAPPPNSIRQGALRVAYLAKKFECKKSGKKSENSEKIRSPPLEVLFPPLPVQQLQEEDLK 833

Query: 507  SL-SLKMKRTSKL 542
            SL SLK  R SKL
Sbjct: 834  SLKSLKSPRVSKL 846


>U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered
           avermectin sensitivityprotein 14, isoform b protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
 Frame = +2

Query: 77  LKLGLTSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVE---DSLF 247
           + LG+T+ L  T ++     KL P  ++  +  ++  C A +FG +L+YA V       F
Sbjct: 286 VSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVNYYGRKEF 345

Query: 248 V----K*GRRIEPSICPND 292
           +    K   RI+  +CP+D
Sbjct: 346 LRKEKKKKTRIDDCVCPSD 364


>U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amino
           acid receptorsubunit gbr-2B protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
 Frame = +2

Query: 77  LKLGLTSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVE---DSLF 247
           + LG+T+ L  T ++     KL P  ++  +  ++  C A +FG +L+YA V       F
Sbjct: 286 VSLGVTTLLTMTTQASGINTKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVNYYGRKEF 345

Query: 248 V----K*GRRIEPSICPND 292
           +    K   RI+  +CP+D
Sbjct: 346 LRKEKKKKTRIDDCVCPSD 364


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 399 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 494
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 399 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 494
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,273
Number of Sequences: 27780
Number of extensions: 309502
Number of successful extensions: 811
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)