Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0080
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    69   5e-14
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 68.5 bits (160), Expect = 5e-14
 Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
 Frame = +1

Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 423
           +F   S V+   ++GG     Q   +  G  I++ATPGRL DF+ +G  +     Y VLD
Sbjct: 257 KFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLD 316

Query: 424 EADRMLDMGFEPQIRKII-EQIRP---DRQTLSGQLLGPKK*RNL 546
           EADRMLDMGF   + +++  Q  P   +RQTL      P++ + L
Sbjct: 317 EADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQL 361



 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 34/90 (37%), Positives = 54/90 (60%)
 Frame = +3

Query: 480 ANTPRQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKEN 659
           A   RQT   +SAT+P+EV++LA  +L +YI I +G +  SA  ++ Q      + +K +
Sbjct: 341 ATGERQT-LMFSATFPEEVQQLAGKFLLNYIFIAVGIVG-SACTDVEQKFFQVSKFDKRS 398

Query: 660 KLNVLLQEIGQSQEPGAKTIIFVETKRKAE 749
           KL  +L+     + P  +T+IFVETKR A+
Sbjct: 399 KLVSILE-----KAPNERTLIFVETKRNAD 423



 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
 Frame = +2

Query: 92  SQTGSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELAQQIQQVAADFGPH 259
           +QTGSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA QI    AD G  
Sbjct: 202 AQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQI----ADQGKK 257

Query: 260 LMFVTRVCLVVLLKESKPGTWRG 328
             + + V + V+   +     RG
Sbjct: 258 FAYNSTVKVAVIYGGTSTNHQRG 280



 Score = 31.5 bits (68), Expect = 0.007
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 6   VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
           VK  GY +PT IQ    P+ +SG++L+  A+
Sbjct: 173 VKKSGYTKPTAIQKYAIPVILSGRDLMSCAQ 203


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -2

Query: 738 SWFQQKLLFSHQVLDFVQFLAIIHLIYFL 652
           SW + K  F  +++ F++ +   + +YF+
Sbjct: 419 SWLKSKKEFKEELIKFIEEMLQRNDVYFV 447


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -2

Query: 738 SWFQQKLLFSHQVLDFVQFLAIIHLIYFL 652
           SW + K  F  +++ F++ +   + +YF+
Sbjct: 426 SWLKSKKEFKEELIKFIEEMLQRNDVYFV 454


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,659
Number of Sequences: 336
Number of extensions: 4413
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)