Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0080
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 145 7e-36
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 115 6e-27
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 93 3e-20
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 80 3e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 79 9e-16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 68 2e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 66 5e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 64 2e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 3e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 59 6e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 58 1e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 57 3e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 56 7e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 52 9e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 51 2e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 51 2e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 49 6e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 8e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 49 8e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 48 2e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 9e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 40 4e-04
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 33 0.058
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.10
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.10
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 5.0
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 26 5.0
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 6.6
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 8.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 145 bits (351), Expect = 7e-36
Identities = 68/105 (64%), Positives = 81/105 (77%)
Frame = +1
Query: 238 CCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 417
C +F +S +RNTCV+GG P+ Q RDL RGVEI IATPGRL+D L+ TNL+R TYLV
Sbjct: 215 CTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLV 274
Query: 418 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
LDEADRMLDMGFEPQIRKI++QIRPDRQT+ PK+ + L R
Sbjct: 275 LDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLAR 319
Score = 82.6 bits (195), Expect = 5e-17
Identities = 41/87 (47%), Positives = 61/87 (70%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SATWPKEV++LA DYL DYIQ+ +GSL L+A+HNI QIV++ +K +L
Sbjct: 301 RQTVM-FSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGK 359
Query: 672 LLQEIGQSQEPGAKTIIFVETKRKAEN 752
++E+ + ++ K +IF TKR A++
Sbjct: 360 DIEEVLKDRD--NKVLIFTGTKRVADD 384
Score = 81.8 bits (193), Expect = 1e-16
Identities = 40/54 (74%), Positives = 42/54 (77%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
S TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFG 219
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/30 (56%), Positives = 26/30 (86%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 95
VK +G++ PTPIQ Q WP+AMSG+++VG++
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGIS 166
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 115 bits (277), Expect = 6e-27
Identities = 54/93 (58%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Frame = +1
Query: 238 CCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCT 408
C F +R C +GGAP ++Q DL+RG EIV+ TPGR+ID L TNL RCT
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCT 570
Query: 409 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 507
YLVLDEADRM D+GFEPQ+ +II IRPDRQT+
Sbjct: 571 YLVLDEADRMFDLGFEPQVMRIINNIRPDRQTV 603
Score = 64.5 bits (150), Expect = 2e-11
Identities = 26/46 (56%), Positives = 38/46 (82%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 229
++TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+ ++GY++PT IQAQ P SG++++GVAK
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAK 463
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 93.5 bits (222), Expect = 3e-20
Identities = 42/79 (53%), Positives = 58/79 (73%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 423
+F S+VR V+GGA R Q R +++G +++ ATPGRL+D +++G +L +LVLD
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLD 336
Query: 424 EADRMLDMGFEPQIRKIIE 480
EADRMLDMGFEPQIR I+E
Sbjct: 337 EADRMLDMGFEPQIRHIVE 355
Score = 53.2 bits (122), Expect = 4e-08
Identities = 33/86 (38%), Positives = 53/86 (61%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SAT+P++++ LA D+L DY+ +++G + S + NI Q V ++ EK + L
Sbjct: 365 RQT-LMFSATFPRDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLD 422
Query: 672 LLQEIGQSQEPGAKTIIFVETKRKAE 749
+L + P T+IFVETKR A+
Sbjct: 423 ILHTL----PPEGLTLIFVETKRMAD 444
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+K GY +PTP+Q PI SG++L+ A+
Sbjct: 184 IKLSGYTQPTPVQKNSIPIVTSGRDLMACAQ 214
Score = 32.7 bits (71), Expect = 0.058
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 13/66 (19%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQ 232
+QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 233 QVAADF 250
+ + F
Sbjct: 273 EESRKF 278
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = +1
Query: 268 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 447
R V GG EQ+ + +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDM
Sbjct: 355 RCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDM 414
Query: 448 GFEPQIRKIIEQI 486
GFE + KI+ +
Sbjct: 415 GFEDDVNKILSSL 427
Score = 61.3 bits (142), Expect = 1e-10
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGPHL 262
++TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F L
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL 352
Query: 263 MF 268
F
Sbjct: 353 GF 354
Score = 32.3 bits (70), Expect = 0.076
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+K + YKEP+ IQ P+ + K+L+G+A+
Sbjct: 264 LKKVNYKEPSSIQRAAIPVLLQRKDLIGIAE 294
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 78.6 bits (185), Expect = 9e-16
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 459
V+GGAPK EQAR + ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE
Sbjct: 270 VYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQ 328
Query: 460 QIRKIIEQIRPD 495
IR II PD
Sbjct: 329 DIRNIISH-TPD 339
Score = 63.3 bits (147), Expect = 4e-11
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +3
Query: 483 NTPRQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE-HEKEN 659
N RQT F +SATWP+ V+ LA +L D ++I IGS +L+A+ NI QIV+I + KE
Sbjct: 343 NGSRQTVF-FSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKER 401
Query: 660 KLNVLLQEIGQSQEPGAKTIIFVETKRKA 746
L+ LL++ S K +IFV K++A
Sbjct: 402 MLDNLLRKHLSSGGKDDKILIFVLYKKEA 430
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +3
Query: 21 YKEPTPIQAQGWPIAMSGKNLVGVAK 98
YKEPTPIQA WP ++G+++VG+A+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAE 210
Score = 38.7 bits (86), Expect = 9e-04
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 226
++TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 67.7 bits (158), Expect = 2e-12
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGF 453
V GGA +R +A L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++GF
Sbjct: 195 VIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGF 253
Query: 454 EPQIRKIIEQI-RPDRQTLSGQLLGPKK*RNLLRIT 558
E ++R+I++ + +RQTL K +L RI+
Sbjct: 254 EDEMRQIMKILPSENRQTLLFSATQTTKVEDLARIS 289
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 247
++TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 66.1 bits (154), Expect = 5e-12
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRM 438
VR+ + GG QA L + +++ TPGRL+D LE KG + L+ YL++DEADR+
Sbjct: 143 VRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFS-LKNLKYLIMDEADRL 201
Query: 439 LDMGFEPQIRKIIEQIRPDRQTL 507
LDM F P I KI++ I +R+TL
Sbjct: 202 LDMDFGPIIDKILKIIPHERRTL 224
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 235
+QTGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 90 AQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 32.7 bits (71), Expect = 0.058
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +3
Query: 15 MGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+G+K PTPIQ + P+ ++ ++++G+A+
Sbjct: 64 LGFKTPTPIQQEAIPVVLNKRDVIGLAQ 91
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 64.5 bits (150), Expect = 2e-11
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFE 456
V GG K+ + + +GV I+I TPGRL D LE ++ + ++VLDE DR++DMGFE
Sbjct: 253 VIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFE 312
Query: 457 PQIRKIIEQIRPDRQTLSGQLLGP-KK*RNLLRITWETTFRSI*D 588
+ KI+ + + L P +K L T + T + + D
Sbjct: 313 ETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSD 357
Score = 51.2 bits (117), Expect = 2e-07
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVA 241
+QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.5 bits (140), Expect = 3e-10
Identities = 30/81 (37%), Positives = 44/81 (54%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
+R+ + GG EQ L +IV+ATPGR + + L Y+V DEADR+ +
Sbjct: 168 LRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFE 227
Query: 445 MGFEPQIRKIIEQIRPDRQTL 507
MGF Q+ +I+ + RQTL
Sbjct: 228 MGFAAQLTEILHALPTSRQTL 248
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 250
++TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDF 162
Score = 33.5 bits (73), Expect = 0.033
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 18 GYKEPTPIQAQGWPIAMSGKNLVGVAK 98
G+K PTPIQ + P+ + G+++VG+A+
Sbjct: 88 GFKAPTPIQRKTIPLLLEGRDVVGMAR 114
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 59.3 bits (137), Expect = 6e-10
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +1
Query: 277 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGF 453
C+ GG + Q ++L + +IVIATPGR ID + ++ +V+DEADRML+ GF
Sbjct: 364 CI-GGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGF 422
Query: 454 EPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRITWETTFRSI*DH 591
++ +II+ RQT+ K +L+R++ R D+
Sbjct: 423 ADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDN 468
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +2
Query: 74 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
K+ + TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIA 354
Query: 254 PHLMFVTRVCL 286
+ +C+
Sbjct: 355 SFTDIMVCLCI 365
Score = 33.1 bits (72), Expect = 0.044
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 95
G+ +G++ PT IQ + P+A+ GK++VG A
Sbjct: 273 GLSNLGFEVPTQIQDKTIPLALLGKDIVGAA 303
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +1
Query: 286 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 465
GG R+ L V IV+ TPGR++D KG + CT V+DEAD++L F P I
Sbjct: 148 GGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPII 207
Query: 466 RKIIEQIRPDRQ 501
+++ +RQ
Sbjct: 208 EQLLSYFPKNRQ 219
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
R++ G+GKT A+++P++ ++ + + L+L PTRELA Q QV G H+
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHM 139
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 113
G+ G++ P+PIQ + PIA+SG++++ AK K
Sbjct: 58 GIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 56.8 bits (131), Expect = 3e-09
Identities = 32/96 (33%), Positives = 50/96 (52%)
Frame = +1
Query: 271 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 450
+ C+ GG R+ L+ GV +V+ TPGR+ D +++ VLDEAD ML G
Sbjct: 119 HACI-GGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRG 177
Query: 451 FEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRIT 558
F+ QI I + + P Q + LL +++L +T
Sbjct: 178 FKDQIYDIFQLLPPTAQVV---LLSATMPQDVLEVT 210
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHLMF 268
++Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G +
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 269 VTRVCL 286
C+
Sbjct: 117 ECHACI 122
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 55.6 bits (128), Expect = 7e-09
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Frame = +1
Query: 178 WSDCFGLGAYQRVSTTNSASCCRFWTTSYVRNT------CVFGGAPKREQARDLERGVEI 339
W+ GLGA +S T + F T + + GG +E+ L R + I
Sbjct: 106 WTSLDGLGALV-ISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNI 163
Query: 340 VIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQ 516
++ TPGRL+ +++ + L+LDEADR+LDMGF + I+ + RQT+
Sbjct: 164 LVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFS 223
Query: 517 LLGPKK*RNLLRIT 558
K ++L R++
Sbjct: 224 ATQTKSVKDLARLS 237
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 52.0 bits (119), Expect = 9e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Frame = +1
Query: 271 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 450
+ C+ GG + L+ G +V TPGR+ D + + + L+LDEAD +L+ G
Sbjct: 121 HACI-GGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQG 179
Query: 451 FEPQIRKIIEQIRPDRQTL 507
F+ QI I + P Q +
Sbjct: 180 FKEQIYDIYRYLPPGTQVV 198
Score = 38.7 bits (86), Expect = 9e-04
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHLMF 268
++Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H+
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 269 VTRVCL 286
C+
Sbjct: 119 QCHACI 124
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.2 bits (117), Expect = 2e-07
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRM 438
+R + GG K + + RG ++IATPGRL D L+ T +LDEADR+
Sbjct: 141 IRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRL 200
Query: 439 LDMGFEPQIRKIIEQIRPDR-QTLSGQLLGPKK*RNLLRITWETTFRSI 582
+DMGF I I E + + + L P K N+ R T F+ I
Sbjct: 201 MDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLI 249
Score = 38.7 bits (86), Expect = 9e-04
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 241
+++TG+GKTLA++L A + P +++L+PTRELA QI + A
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 51.2 bits (117), Expect = 2e-07
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEAD 432
+++ + GG Q+ DL + +V+ATPGRL D + E+ L+R +LV+DEAD
Sbjct: 104 LKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEAD 163
Query: 433 RMLDMGFEPQIRKIIEQI--RPDRQTL 507
R+L F + + DRQTL
Sbjct: 164 RLLSPTFADDLDDCFSVLPASEDRQTL 190
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/57 (45%), Positives = 33/57 (57%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
++TGSGKT A+ LP I + P G AL+L PTRELA QI + A G +L
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANL 102
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 49.2 bits (112), Expect = 6e-07
Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +1
Query: 331 VEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 486
++++++TPGRL+D + + +LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 261 IDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 229
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/61 (39%), Positives = 38/61 (62%)
Frame = +1
Query: 322 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 501
E+ +VI TPGRL + L ++ + L+LDEAD ++DMGF+ ++ II Q+ R+
Sbjct: 130 EKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRR 187
Query: 502 T 504
T
Sbjct: 188 T 188
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = +2
Query: 74 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 247
K+ + TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLV 86
V G+K+ TP+QA P+ + K+LV
Sbjct: 16 VAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.8 bits (111), Expect = 8e-07
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLVLDEADRM 438
+R + GG ++Q R L + +V+ATPGRL + + T N ++ LVLDEADR+
Sbjct: 221 IRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRL 280
Query: 439 LDMGFEPQIRKIIE 480
L ++ K++E
Sbjct: 281 LQKSHFEELSKLLE 294
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 235
++ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 238
K+ +++TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 334 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 474
+IVIATP R + + G L + +LV+DEAD ML G+ ++ +
Sbjct: 142 DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTL 188
Score = 28.7 bits (61), Expect = 0.94
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 21 YKEPTPIQAQGWPIAMSGKNLVGVAK 98
+++PT +Q++ P+A+ GK+LV A+
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQAR 59
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 41.9 bits (94), Expect = 9e-05
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHLMF 268
+SQ+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G +
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKY--- 210
Query: 269 VTRVCLVVLLKESKP 313
T V +K+S P
Sbjct: 211 -TEVKTAFGIKDSVP 224
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 334 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
+IVI TPG ++D +++ + + VLDEAD MLD
Sbjct: 232 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 268
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA--ADFGPHLMFV 271
TGSGKT+AY+ P + + P G A+++APTREL +QI + A FG L +
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKII 147
Score = 38.7 bits (86), Expect = 9e-04
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +1
Query: 301 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 477
+E+A L ++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+
Sbjct: 157 QEKAPKLREKYDMCIGTPMRLVQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHIL 214
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 265 VRNTCVFGGAPKR---EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 435
VR +GG + E +D + IV+ATPGRL + + + + VLDE D+
Sbjct: 149 VRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208
Query: 436 MLD-MGFEPQIRKIIEQIRPDRQTL 507
+L+ + I+++ P +Q +
Sbjct: 209 LLESVDMRRDIQEVFRATPPQKQVM 233
Score = 33.9 bits (74), Expect = 0.025
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 11 DNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 190
D+G + + S + + ++++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 191 -LVLAPTRELAQQIQQVAADFGPHL 262
LVL TRELA QI+ A F +L
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYL 146
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 32.7 bits (71), Expect = 0.058
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 313 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIEQIR 489
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 490 PDRQTLSGQLL 522
QT ++L
Sbjct: 195 ESLQTYPDKVL 205
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 229
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 229
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Frame = +1
Query: 100 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTT 258
GF + G + HC H++ AY E F Y R++T + C R W +
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLWDS 91
Query: 259 S 261
+
Sbjct: 92 T 92
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 142 AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTTSYV 267
AHKQ ER + L ++Q + S SCC+ + S++
Sbjct: 184 AHKQTQETHERIRNWLSSLNSWQLAAFERSVSCCKSFIVSFM 225
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 104 SGKTL-AYILPAIVHINNQP--PIRRGDGPIALVLAPTRELAQQIQQVAADFGPHLM 265
S TL A + + +N+ P PI G +L +A ++L + IQQ A +F HL+
Sbjct: 83 SSSTLYATLYELLQKLNSGPGNPITPGSFLNSLEIATNKKLVRSIQQDAQEFLQHLV 139
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 747 QLFSWFQQKLLFSHQVLDFVQFLA 676
+L SW+ + +SH+V+D V + A
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTA 332
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 223
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,742
Number of Sequences: 5004
Number of extensions: 71710
Number of successful extensions: 292
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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