Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0080
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       82   6e-18
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 81.8 bits (193), Expect = 6e-18
 Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
 Frame = +1

Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 423
           +F   S ++    +GG     Q   L  G  I++ATPGRL+DF+EKG        +LVLD
Sbjct: 295 KFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLD 354

Query: 424 EADRMLDMGFEPQIRKII--EQIRP--DRQTLSGQLLGPKK*RNLLR 552
           EADRMLDMGF P I K++  E + P  +RQTL      P + ++L R
Sbjct: 355 EADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLAR 401



 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 50/86 (58%)
 Frame = +3

Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
           RQT   +SAT+P EV+ LA  +L +Y+ + +G +  + +       ++ + ++K++ L  
Sbjct: 383 RQT-LMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVAR-NKKKDLLKE 440

Query: 672 LLQEIGQSQEPGAKTIIFVETKRKAE 749
           +L+    S   G  T++FVE K+KA+
Sbjct: 441 ILERENDSGTLGG-TLVFVEMKKKAD 465



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +3

Query: 6   VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
           +K  GYK+PTP+Q    PI M+G++L+  A+
Sbjct: 211 IKKSGYKKPTPVQKHALPIIMNGRDLMACAQ 241



 Score = 30.3 bits (65), Expect = 0.020
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 92  SQTGSGKTLAYILPAIVHINNQP----PIRRGDGPIALVLAPTRELAQQIQQVAADFGPH 259
           +QTGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F  +
Sbjct: 240 AQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLN 299

Query: 260 LMFVTRV 280
            +  T V
Sbjct: 300 SILKTVV 306


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 642 EHEKENKLNVLLQEIG 689
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,044
Number of Sequences: 438
Number of extensions: 4941
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)