Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0080
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 143 1e-34
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 143 1e-34
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 140 1e-33
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 119 2e-27
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 119 2e-27
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 119 2e-27
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 118 6e-27
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 116 2e-26
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 109 2e-24
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 101 4e-22
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 101 7e-22
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 99 2e-21
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 99 2e-21
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 97 1e-20
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 97 1e-20
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 85 5e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 84 8e-17
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 81 8e-16
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 80 2e-15
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 79 2e-15
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 79 3e-15
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 79 3e-15
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 66 2e-11
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 65 5e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 65 5e-11
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 64 1e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 63 2e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 63 2e-10
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 63 2e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 63 2e-10
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 63 2e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 62 5e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 61 9e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 9e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 9e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 60 1e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 60 1e-09
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 60 2e-09
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 60 2e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 59 4e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 59 4e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 58 6e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 58 6e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 58 6e-09
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 57 1e-08
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 57 1e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 57 1e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 56 2e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 56 2e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 56 3e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 55 4e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 53 2e-07
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 52 5e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 51 7e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 50 1e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 47 2e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 4e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.002
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 39 0.004
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 38 0.009
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 38 0.009
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 38 0.009
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 37 0.017
At2g28600.1 68415.m03476 expressed protein 36 0.029
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.050
At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase (A... 29 2.5
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 3.3
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 29 4.4
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 4.4
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.8
At5g63800.1 68418.m08007 glycosyl hydrolase family 35 protein si... 28 7.7
At4g26140.2 68417.m03763 beta-galactosidase, putative / lactase,... 28 7.7
At4g26140.1 68417.m03762 beta-galactosidase, putative / lactase,... 28 7.7
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 143 bits (347), Expect = 1e-34
Identities = 72/113 (63%), Positives = 83/113 (73%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 423
+F S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID LE TNL+R TYLVLD
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLD 319
Query: 424 EADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRITWETTFRSI 582
EADRMLDMGFEPQIRKI+ QIRPDRQTL P++ L R +++I
Sbjct: 320 EADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAI 372
Score = 77.8 bits (183), Expect = 7e-15
Identities = 34/54 (62%), Positives = 45/54 (83%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT WSATWP+EV+ LA +L D + IGS L AN +I Q+++I EK N+L
Sbjct: 344 RQT-LLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 402
Query: 672 LLQEIGQSQEPGAKTIIFVETKR 740
LL+++ G+K +IFVETKR
Sbjct: 403 LLKQL----MDGSKILIFVETKR 421
Score = 50.0 bits (114), Expect = 2e-06
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+ +G+ EPTPIQAQGWP+A+ G++L+G+A+
Sbjct: 180 IAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 143 bits (347), Expect = 1e-34
Identities = 72/113 (63%), Positives = 83/113 (73%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 423
+F S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID LE TNL+R TYLVLD
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLD 319
Query: 424 EADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRITWETTFRSI 582
EADRMLDMGFEPQIRKI+ QIRPDRQTL P++ L R +++I
Sbjct: 320 EADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAI 372
Score = 77.8 bits (183), Expect = 7e-15
Identities = 34/54 (62%), Positives = 45/54 (83%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT WSATWP+EV+ LA +L D + IGS L AN +I Q+++I EK N+L
Sbjct: 344 RQT-LLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 402
Query: 672 LLQEIGQSQEPGAKTIIFVETKR 740
LL+++ G+K +IFVETKR
Sbjct: 403 LLKQL----MDGSKILIFVETKR 421
Score = 50.0 bits (114), Expect = 2e-06
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+ +G+ EPTPIQAQGWP+A+ G++L+G+A+
Sbjct: 180 IAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 140 bits (338), Expect = 1e-33
Identities = 63/97 (64%), Positives = 77/97 (79%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 423
+F ++S ++ TC++GG PK Q RDL++GVEIVIATPGRLID +E TNL+R TYLVLD
Sbjct: 194 KFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLD 253
Query: 424 EADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK 534
EADRMLDMGF+PQIRKI+ IRPDRQTL PK+
Sbjct: 254 EADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKE 290
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFG 196
Score = 70.1 bits (164), Expect = 1e-12
Identities = 37/83 (44%), Positives = 57/83 (68%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT + WSATWPKEV++L++ +L + ++ IGS L AN I QIVD+ E +K NKL
Sbjct: 278 RQTLY-WSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK 336
Query: 672 LLQEIGQSQEPGAKTIIFVETKR 740
LL++I G++ ++F++TK+
Sbjct: 337 LLEDI----MDGSRILVFLDTKK 355
Score = 51.6 bits (118), Expect = 5e-07
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
VK G+ EPTPIQ+QGWP+AM G++L+G+A+
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAE 144
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 119 bits (287), Expect = 2e-27
Identities = 60/117 (51%), Positives = 78/117 (66%)
Frame = +1
Query: 196 LGAYQRVSTTNSASCCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 375
L + ++T +F +S + TC++GGAPK Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
Query: 376 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNL 546
E +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTL PK R +
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Frame = +3
Query: 486 TPRQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENK 662
T RQT ++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q +++ EK+ +
Sbjct: 334 TKRQT-LMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR 392
Query: 663 LNVLLQEIGQSQEPGAKTIIFVETKRKAE 749
L++I +SQEPG+K IIF TKR +
Sbjct: 393 ----LEQILRSQEPGSKVIIFCSTKRMCD 417
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/54 (51%), Positives = 36/54 (66%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 119 bits (287), Expect = 2e-27
Identities = 60/117 (51%), Positives = 78/117 (66%)
Frame = +1
Query: 196 LGAYQRVSTTNSASCCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 375
L + ++T +F +S + TC++GGAPK Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
Query: 376 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNL 546
E +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTL PK R +
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Frame = +3
Query: 486 TPRQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENK 662
T RQT ++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q +++ EK+ +
Sbjct: 334 TKRQT-LMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR 392
Query: 663 LNVLLQEIGQSQEPGAKTIIFVETKRKAE 749
L++I +SQEPG+K IIF TKR +
Sbjct: 393 ----LEQILRSQEPGSKVIIFCSTKRMCD 417
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/54 (51%), Positives = 36/54 (66%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 119 bits (287), Expect = 2e-27
Identities = 60/117 (51%), Positives = 78/117 (66%)
Frame = +1
Query: 196 LGAYQRVSTTNSASCCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 375
L + ++T +F +S + TC++GGAPK Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
Query: 376 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNL 546
E +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTL PK R +
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Frame = +3
Query: 486 TPRQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENK 662
T RQT ++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q +++ EK+ +
Sbjct: 334 TKRQT-LMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR 392
Query: 663 LNVLLQEIGQSQEPGAKTIIFVETKRKAE 749
L++I +SQEPG+K IIF TKR +
Sbjct: 393 ----LEQILRSQEPGSKVIIFCSTKRMCD 417
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/54 (51%), Positives = 36/54 (66%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 118 bits (283), Expect = 6e-27
Identities = 59/117 (50%), Positives = 77/117 (65%)
Frame = +1
Query: 196 LGAYQRVSTTNSASCCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 375
L + ++T RF +S + TC++GGAPK Q ++LERG +IV+ATPGRL D L
Sbjct: 513 LAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL 572
Query: 376 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNL 546
E + Q+ + LVLDEADRMLDMGFEPQIRKI+ +I P RQTL PK+ R +
Sbjct: 573 EMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKI 629
Score = 74.9 bits (176), Expect = 5e-14
Identities = 39/89 (43%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Frame = +3
Query: 489 PRQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKL 665
PR+ ++ATWPKEV+K+A D L + +Q+NIG + +L+AN I Q V++ + EKE +
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERR- 669
Query: 666 NVLLQEIGQSQEPGAKTIIFVETKRKAEN 752
L++I +SQE G+K IIF TKR ++
Sbjct: 670 ---LEQILRSQERGSKVIIFCSTKRLCDH 695
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +3
Query: 18 GYKEPTPIQAQGWPIAMSGKNLVGVAK 98
G+ PTPIQAQ WPIA+ +++V +AK
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAK 480
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 116 bits (278), Expect = 2e-26
Identities = 56/117 (47%), Positives = 77/117 (65%)
Frame = +1
Query: 196 LGAYQRVSTTNSASCCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 375
L + ++T +F +S + C++GGAPK Q +++ERGV+IV+ATPGRL D L
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366
Query: 376 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNL 546
E +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ RQTL PK+ R +
Sbjct: 367 EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423
Score = 72.5 bits (170), Expect = 3e-13
Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Frame = +3
Query: 486 TPRQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENK 662
T RQT ++ATWPKEV+K+A D L + Q+NIG++ +L AN +I Q +++ EK ++
Sbjct: 405 TKRQT-LMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSR 463
Query: 663 LNVLLQEIGQSQEPGAKTIIFVETKRKAE 749
L++I +SQEPG+K IIF TKR +
Sbjct: 464 ----LEQILRSQEPGSKIIIFCSTKRMCD 488
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/54 (51%), Positives = 35/54 (64%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFG 325
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
V + G+ P+PIQAQ WPIAM +++V +AK
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 109 bits (262), Expect = 2e-24
Identities = 53/96 (55%), Positives = 66/96 (68%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
+R + V+GG K EQ ++L+ G EIV+ATPGRLID L+ + R +YLVLDEADRM D
Sbjct: 330 LRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD 389
Query: 445 MGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
+GFEPQ+R I+ QIRPDRQTL P K L R
Sbjct: 390 LGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAR 425
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/53 (56%), Positives = 40/53 (75%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 250
++TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+K Y++PT IQ Q PI +SG++++G+AK
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273
Score = 38.3 bits (85), Expect = 0.005
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SAT P +V+KLA + L D I++ +G + + AN +I Q+V++ + KL
Sbjct: 407 RQT-LLFSATMPWKVEKLAREILSDPIRVTVGEVGM-ANEDITQVVNVIPSDAE--KLPW 462
Query: 672 LLQEIGQSQEPGAKTIIFVETK 737
LL+++ + G ++F K
Sbjct: 463 LLEKLPGMIDEG-DVLVFASKK 483
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 101 bits (243), Expect = 4e-22
Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMG 450
V+GG+ +Q +L+RG EIV+ TPGR+ID L + TNL+R TYLV+DEADRM DMG
Sbjct: 503 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMG 562
Query: 451 FEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
FEPQI +I++ IRPDRQT+ P++ L R
Sbjct: 563 FEPQITRIVQNIRPDRQTVLFSATFPRQVETLAR 596
Score = 72.1 bits (169), Expect = 4e-13
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 229
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+K + Y++P PIQAQ PI MSG++ +GVAK
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAK 441
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 101 bits (241), Expect = 7e-22
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
V+ +GG P +Q R+LERGV+I++ATPGRL D LE+G +LQ +L LDEADRMLD
Sbjct: 253 VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLD 312
Query: 445 MGFEPQIRKIIEQI 486
MGFEPQIRKI++Q+
Sbjct: 313 MGFEPQIRKIVQQM 326
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SAT+P+E+++LA D+L +YI + +G + S+ I+Q V+ + +K + L
Sbjct: 334 RQTML-FSATFPREIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMD 391
Query: 672 LL--QEIGQSQEPGAKTIIFVETKRKAEN 752
LL Q +Q A T++FVETK+ A++
Sbjct: 392 LLHAQRENGNQGKQALTLVFVETKKGADS 420
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 250
+QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKF 247
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 99 bits (238), Expect = 2e-21
Identities = 51/98 (52%), Positives = 67/98 (68%), Gaps = 4/98 (4%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
V+ +GG P +Q R+LERGV+I++ATPGRL D LE+ ++Q +L LDEADRMLD
Sbjct: 266 VKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 325
Query: 445 MGFEPQIRKIIEQI----RPDRQTLSGQLLGPKK*RNL 546
MGFEPQIRKI+EQ+ R RQTL P++ + L
Sbjct: 326 MGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRL 363
Score = 52.0 bits (119), Expect = 4e-07
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SAT+P+E+++LA D+L +YI + +G + S+ I+Q V+ + +K + L
Sbjct: 347 RQT-LLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMD 404
Query: 672 LL--QEIGQSQEPGAKTIIFVETKRKAEN 752
LL Q Q A T++FVETKR A++
Sbjct: 405 LLHAQRENGIQGKQALTLVFVETKRGADS 433
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 250
+QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKF 260
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
++ Y +PTP+Q PI + G++L+ A+
Sbjct: 174 IRRCKYVKPTPVQRHAIPILLEGRDLMACAQ 204
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 99 bits (238), Expect = 2e-21
Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADR 435
+R V+GG+ +Q +L+RG EIV+ TPGR+ID L + TNL+R T+LV+DEADR
Sbjct: 631 IRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 690
Query: 436 MLDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
M DMGFEPQI +II+ IRP+RQT+ P++ L R
Sbjct: 691 MFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLAR 729
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F L
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPL 629
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+K + Y++P PIQ Q PI MSG++ +GVAK
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAK 574
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/74 (58%), Positives = 56/74 (75%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
V+ +GG P +Q R+LERG +I++ATPGRL D LE+ ++Q +L LDEADRMLD
Sbjct: 258 VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 317
Query: 445 MGFEPQIRKIIEQI 486
MGFEPQIRKI+EQ+
Sbjct: 318 MGFEPQIRKIVEQM 331
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/86 (37%), Positives = 55/86 (63%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SAT+P ++++LA D++ +YI + +G + S+ I Q V+ QE +K + L
Sbjct: 339 RQTML-FSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMD 396
Query: 672 LLQEIGQSQEPGAKTIIFVETKRKAE 749
LL ++Q+ + T++FVETKR A+
Sbjct: 397 LLHAQRETQDKQSLTLVFVETKRGAD 422
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 250
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/74 (58%), Positives = 56/74 (75%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
V+ +GG P +Q R+LERG +I++ATPGRL D LE+ ++Q +L LDEADRMLD
Sbjct: 258 VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 317
Query: 445 MGFEPQIRKIIEQI 486
MGFEPQIRKI+EQ+
Sbjct: 318 MGFEPQIRKIVEQM 331
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/86 (37%), Positives = 55/86 (63%)
Frame = +3
Query: 492 RQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 671
RQT +SAT+P ++++LA D++ +YI + +G + S+ I Q V+ QE +K + L
Sbjct: 339 RQTML-FSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMD 396
Query: 672 LLQEIGQSQEPGAKTIIFVETKRKAE 749
LL ++Q+ + T++FVETKR A+
Sbjct: 397 LLHAQRETQDKQSLTLVFVETKRGAD 422
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 250
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 85.0 bits (201), Expect = 5e-17
Identities = 41/90 (45%), Positives = 54/90 (60%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
+R+ GG R Q ++RGV IV+ATPGRL D L K +L C YL LDEADR++D
Sbjct: 257 LRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVD 316
Query: 445 MGFEPQIRKIIEQIRPDRQTLSGQLLGPKK 534
+GFE IR++ + + RQTL P K
Sbjct: 317 LGFEDDIREVFDHFKSQRQTLLFSATMPTK 346
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 250
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 95
+K G +PTPIQ QG P+ ++G++++G+A
Sbjct: 161 LKEKGIVQPTPIQVQGLPVILAGRDMIGIA 190
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 84.2 bits (199), Expect = 8e-17
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = +1
Query: 268 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 447
R T + GG EQ + +G EIVIATPGRLID LE+ L +C Y+VLDEADRM+DM
Sbjct: 419 RVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDM 478
Query: 448 GFEPQIRKIIE 480
GFEPQ+ +++
Sbjct: 479 GFEPQVAGVLD 489
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
++TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F +L
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL 416
Query: 263 MF 268
F
Sbjct: 417 GF 418
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
V+ GYK+P+PIQ P+ + ++++G+A+
Sbjct: 328 VERAGYKKPSPIQMAAIPLGLQQRDVIGIAE 358
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 81.0 bits (191), Expect = 8e-16
Identities = 35/92 (38%), Positives = 58/92 (63%)
Frame = +1
Query: 277 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 456
C++GG P +Q R L+ GV++ + TPGR+ID +++G NL ++VLDEAD+ML +GF
Sbjct: 209 CLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 268
Query: 457 PQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
+ I+E++ RQ++ P R+L +
Sbjct: 269 EDVEIILEKLPEKRQSMMFSATMPSWIRSLTK 300
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
R++TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ + P L
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSL 205
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 510 WSATWPKEVKKLAEDYLGDYIQIN-IGSLQLSANHNILQIVDICQEHEKENKLNVLLQEI 686
+SAT P ++ L + YL + + ++ +G I I + + + + L+ E
Sbjct: 287 FSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEH 346
Query: 687 GQSQEPGAKTIIFVETKRKAE 749
+ G K I+F +TKR A+
Sbjct: 347 AK----GGKCIVFTQTKRDAD 363
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/92 (35%), Positives = 58/92 (63%)
Frame = +1
Query: 277 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 456
C++GG P +Q R+L G+++ + TPGR+ID +++G NL ++VLDEAD+ML +GF
Sbjct: 221 CLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 280
Query: 457 PQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
+ I++++ RQ++ P R+L +
Sbjct: 281 EDVEIILQKLPAKRQSMMFSATMPSWIRSLTK 312
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +2
Query: 8 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 184
K G+++ + L + ++ R++TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 185 IALVLAPTRELAQQIQQVAADFGPHL 262
LVLAPTRELA+Q+++ + P L
Sbjct: 192 QCLVLAPTRELARQVEKEFRESAPSL 217
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 510 WSATWPKEVKKLAEDYLGDYIQIN-IGSLQLSANHNILQIVDICQEHEKENKLNVLLQEI 686
+SAT P ++ L + YL + + I+ +G I + + + + L++E
Sbjct: 299 FSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEH 358
Query: 687 GQSQEPGAKTIIFVETKRKAE 749
G+ G K I+F +TKR A+
Sbjct: 359 GK----GGKCIVFTQTKRDAD 375
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/90 (43%), Positives = 52/90 (57%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
+R+ GG R Q +++GV IV+ATPGRL D L K +L C L LDEADR++D
Sbjct: 208 LRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVD 267
Query: 445 MGFEPQIRKIIEQIRPDRQTLSGQLLGPKK 534
+GFE IR + + + RQTL P K
Sbjct: 268 LGFEDDIRHVFDHFKSQRQTLLFSATMPAK 297
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 250
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 95
+K G PTPIQ QG P+ +SG++++G+A
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSGRDMIGIA 141
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 79.0 bits (186), Expect = 3e-15
Identities = 36/82 (43%), Positives = 51/82 (62%)
Frame = +1
Query: 262 YVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 441
Y+ CV+GG Q L RGV++V+ TPGR+ID +E + L YLVLDEAD+ML
Sbjct: 206 YLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQML 265
Query: 442 DMGFEPQIRKIIEQIRPDRQTL 507
+GFE + I+E + RQ++
Sbjct: 266 AVGFEEAVESILENLPTKRQSM 287
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 253
R++TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESA 204
Query: 254 PHLMFV 271
P+L V
Sbjct: 205 PYLSTV 210
Score = 36.7 bits (81), Expect = 0.017
Identities = 26/88 (29%), Positives = 43/88 (48%)
Frame = +3
Query: 486 TPRQTDFEWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 665
T RQ+ +SAT P VKKLA YL + + I++ Q + + + + +
Sbjct: 282 TKRQSML-FSATMPTWVKKLARKYLDNPLNIDLVGDQ---DEKLAEGIKLYAIATTSTSK 337
Query: 666 NVLLQEIGQSQEPGAKTIIFVETKRKAE 749
+L ++ G KTI+F +TKR A+
Sbjct: 338 RTILSDLITVYAKGGKTIVFTQTKRDAD 365
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/79 (46%), Positives = 50/79 (63%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 444
+++ CV+GG+ K Q + GV+IVI TPGRL D +E L +++VLDEADRMLD
Sbjct: 220 LKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLD 279
Query: 445 MGFEPQIRKIIEQIRPDRQ 501
MGFE +R I+ RQ
Sbjct: 280 MGFEEPVRFILSNTNKVRQ 298
Score = 61.7 bits (143), Expect = 5e-10
Identities = 29/81 (35%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Frame = +3
Query: 510 WSATWPKEVKKLAEDYLG-DYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEI 686
+SATWP +V KLA++++ + I++ IGS+ L+ANH+++QI+++ E ++ +L LL++
Sbjct: 302 FSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKY 361
Query: 687 GQSQEPGAKTIIFVETKRKAE 749
+SQ+ + ++F K +AE
Sbjct: 362 HKSQK--NRVLVFALYKVEAE 380
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAG 215
Score = 36.7 bits (81), Expect = 0.017
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +3
Query: 21 YKEPTPIQAQGWPIAMSGKNLVGVAK 98
+++P+PIQ+ WP + G++L+G+AK
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAK 159
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFE 456
V GG ++ +A L +GV +++ATPGRL+D LE + + +LV+DEADR+L+ FE
Sbjct: 260 VIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFE 319
Query: 457 PQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRIT 558
++KI+ + RQT K +L R++
Sbjct: 320 EDLKKILNLLPKTRQTSLFSATQSAKVEDLARVS 353
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/80 (32%), Positives = 42/80 (52%)
Frame = +2
Query: 8 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 187
K+ G R + + + ++ ++TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 188 ALVLAPTRELAQQIQQVAAD 247
LV+ PTRELA Q VA +
Sbjct: 229 VLVICPTRELAIQSYGVAKE 248
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+K MG+ T IQA+ P M G++++G A+
Sbjct: 169 IKEMGFARMTQIQAKAIPPLMMGEDVLGAAR 199
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/70 (42%), Positives = 42/70 (60%)
Frame = +1
Query: 268 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 447
R+ V GG+ R Q L +++V+ TPGR++ +E+G YLVLDEAD M D
Sbjct: 219 RSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDR 278
Query: 448 GFEPQIRKII 477
GF P+IRK +
Sbjct: 279 GFGPEIRKFL 288
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGP 256
S TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 257 HLMF 268
H F
Sbjct: 215 HARF 218
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL-EKGTTNLQRCTYLVLDEADRML 441
+R + + GG +Q +L +G +++IATPGRL+ L E L+ Y+V DEAD +
Sbjct: 127 LRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLF 186
Query: 442 DMGFEPQIRKIIEQIRPDRQTL 507
MGF Q+ +I+ Q+ +RQTL
Sbjct: 187 GMGFAEQLHQILTQLSENRQTL 208
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELG 122
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+K GYK PTPIQ + P+ +SG ++V +A+
Sbjct: 43 IKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 64.1 bits (149), Expect = 1e-10
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = +1
Query: 286 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 465
GG R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L + F+P I
Sbjct: 258 GGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSI 317
Query: 466 RKIIEQIRPDRQTL 507
++I+ + RQ L
Sbjct: 318 EELIQFLPESRQIL 331
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
R++ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +L
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYL 249
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 113
G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 168 GIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/74 (36%), Positives = 46/74 (62%)
Frame = +1
Query: 286 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 465
GG R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L F+P +
Sbjct: 228 GGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287
Query: 466 RKIIEQIRPDRQTL 507
++I+ + +RQ L
Sbjct: 288 EELIQFLPQNRQFL 301
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +L
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYL 219
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 113
G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 138 GIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/74 (36%), Positives = 46/74 (62%)
Frame = +1
Query: 286 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 465
GG R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L F+P +
Sbjct: 228 GGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287
Query: 466 RKIIEQIRPDRQTL 507
++I+ + +RQ L
Sbjct: 288 EELIQFLPQNRQFL 301
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +L
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYL 219
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 113
G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 138 GIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/77 (41%), Positives = 43/77 (55%)
Frame = +1
Query: 271 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 450
+ CV GG RE R L+ GV +V+ TPGR+ D L++ + VLDEAD ML G
Sbjct: 139 HACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRG 197
Query: 451 FEPQIRKIIEQIRPDRQ 501
F+ QI I + + P Q
Sbjct: 198 FKDQIYDIFQLLPPKIQ 214
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2
Query: 188 ALVLAPTRELAQQIQQVAADFGPHLMFVTRVCL 286
ALVLAPTRELAQQI++V G +L C+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 142
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +1
Query: 268 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 447
+ V GG P Q +++GVE++I TPGR++D L K T L VLDE D ML
Sbjct: 216 KTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR 275
Query: 448 GFEPQIRKIIEQI 486
GF Q+ +I + +
Sbjct: 276 GFRDQVMQIFQAL 288
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G L
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 213
Query: 263 MFVT 274
F T
Sbjct: 214 PFKT 217
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 6 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 95
++T GY PTPIQ Q P A++GK+L+ A
Sbjct: 125 LETAGYDFPTPIQMQAIPAALTGKSLLASA 154
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +1
Query: 268 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 447
+ V GG P Q +++GVE++I TPGR++D L K T L VLDE D ML
Sbjct: 79 KTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR 138
Query: 448 GFEPQIRKIIEQI 486
GF Q+ +I + +
Sbjct: 139 GFRDQVMQIFQAL 151
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G L
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 76
Query: 263 MFVT 274
F T
Sbjct: 77 PFKT 80
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFE 456
V GG +R +A+ + G +VIATPGRL+D L+ + + LV+DEADR+L+ FE
Sbjct: 195 VIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFE 254
Query: 457 PQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRIT 558
+ KI++ + RQT K ++L R++
Sbjct: 255 EDMNKILKILPKTRQTALFSATQTSKVKDLARVS 288
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 184
K+ G Q + + K+ ++TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 185 IALVLAPTRELAQQIQQVAADFGPH 259
+V+ PTRELA Q + VA + H
Sbjct: 164 -VIVICPTRELAIQTKNVAEELLKH 187
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRM 438
+R + GG + +Q L + +++ATPGRL D + KG + L+ YLVLDEADR+
Sbjct: 118 LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFS-LKSLKYLVLDEADRL 176
Query: 439 LDMGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLR 552
L+ FE + +I+E+I +R+T KK R L R
Sbjct: 177 LNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQR 214
Score = 35.5 bits (78), Expect = 0.038
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +2
Query: 5 CKDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHI-----NNQPPIR 169
C+ G + + L + K+ +QTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 170 RGDGP--IALVLAPTRELAQQIQQ 235
R P A VL+PTRELA QI +
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAE 107
Score = 34.7 bits (76), Expect = 0.067
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +3
Query: 15 MGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
+G+K P+ IQA+ P A+ GK+++G+A+
Sbjct: 27 LGWKNPSKIQAEALPFALEGKDVIGLAQ 54
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +1
Query: 286 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 465
GG ++ L + V +++ TPGR++D +KG L+ C+ LV+DEAD++L F+P +
Sbjct: 235 GGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294
Query: 466 RKIIEQIRPDRQTL 507
+I + RQ L
Sbjct: 295 EHLISFLPESRQIL 308
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 11 DNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 190
+ G +R + + ++ R++ G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 191 LVLAPTRELAQQIQQVAADFGPHL 262
+++ PTRELA Q QV + G HL
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHL 226
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 113
G+ G++ P+PIQ + PIA++G++++ AK K
Sbjct: 145 GIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +1
Query: 286 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 465
GG ++ L + V +++ TPGR++D +KG L+ C+ LV+DEAD++L F+P +
Sbjct: 235 GGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294
Query: 466 RKIIEQIRPDRQTL 507
+I + RQ L
Sbjct: 295 EHLISFLPESRQIL 308
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 11 DNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 190
+ G +R + + ++ R++ G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 191 LVLAPTRELAQQIQQVAADFGPHL 262
+++ PTRELA Q QV + G HL
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHL 226
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 3 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 113
G+ G++ P+PIQ + PIA++G++++ AK K
Sbjct: 145 GIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = +1
Query: 277 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 456
C++GG Q L+RGV+IV+ TPGR+ D +E+ + + VLDEAD ML MGF
Sbjct: 207 CLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFV 266
Query: 457 PQIRKIIEQI 486
+ I+ ++
Sbjct: 267 EDVELILGKV 276
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADF 250
R++TG GKTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +3
Query: 510 WSATWPKEVKKLAEDYLG-DYIQIN-IGSLQLSANHNILQIVDICQEHEKENKLNVLLQE 683
+SAT P VK ++ +L D I+ +G+ ++ A++++ I C + L+ +
Sbjct: 287 FSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMAR----LIPD 342
Query: 684 IGQSQEPGAKTIIFVETK 737
I G +TIIF ETK
Sbjct: 343 IISCYSSGGQTIIFAETK 360
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/77 (41%), Positives = 42/77 (54%)
Frame = +1
Query: 271 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 450
+ CV GG RE R L+ GV +V+ TPGR+ D L + + VLDEAD ML G
Sbjct: 139 HACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRG 197
Query: 451 FEPQIRKIIEQIRPDRQ 501
F+ QI I + + P Q
Sbjct: 198 FKDQIYDIFQLLPPKIQ 214
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 188 ALVLAPTRELAQQIQQVAADFGPHLMFVTRVCL 286
ALVLAPTRELAQQI++V G + C+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACV 142
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/77 (37%), Positives = 43/77 (55%)
Frame = +1
Query: 271 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 450
+ C+ GG E R LE GV +V TPGR+ D +++ + + L+LDE+D ML G
Sbjct: 135 HACI-GGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRG 193
Query: 451 FEPQIRKIIEQIRPDRQ 501
F+ QI + + PD Q
Sbjct: 194 FKDQIYDVYRYLPPDLQ 210
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 188 ALVLAPTRELAQQIQQVAADFGPHLMFVTRVCL 286
AL+L+PTRELA Q ++ G H C+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +1
Query: 277 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 456
CV GG RE R L+ GV +V+ TPGR+ D L + + VLDEAD ML GF+
Sbjct: 143 CV-GGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFK 201
Query: 457 PQIRKIIEQIRPDR 498
QI I Q+ P +
Sbjct: 202 DQIYDIF-QLLPSK 214
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2
Query: 188 ALVLAPTRELAQQIQQVAADFGPHLMFVTRVCL 286
ALVLAPTRELAQQI++V G +L + C+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACV 144
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +1
Query: 304 EQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 474
EQ R +I++ATPGRL D +E T L+ LVLDEAD +LDMGF I +I
Sbjct: 174 EQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERI 233
Query: 475 IEQIRPDRQTLSGQLLGPKK*RNL 546
I + +RQT P++ R +
Sbjct: 234 ISAVPKERQTFLFSATVPEEVRQI 257
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +2
Query: 8 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGD--G 181
KD G + + L K+ +++TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 182 PI-ALVLAPTRELAQQ 226
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 58.8 bits (136), Expect = 4e-09
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Frame = +1
Query: 280 VFGGAP-KREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDM 447
V GG EQ R +I++ATPGRL D +E + T L LVLDEAD +LDM
Sbjct: 493 VIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDM 552
Query: 448 GFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRI 555
GF I +II + RQT P++ R + +
Sbjct: 553 GFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHV 588
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 8 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 184
KD G + + L K+ +++TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 185 --IALVLAPTRELAQQ 226
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +1
Query: 280 VFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDM 447
V GG + R L++ +I++ATPGRL D ++ + T L LVLDEAD +LDM
Sbjct: 191 VIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDM 250
Query: 448 GFEPQIRKIIEQIRPDRQT 504
GF +I +II + RQT
Sbjct: 251 GFRREIERIIAAVPKQRQT 269
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 74 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 226
K+ +++TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +1
Query: 253 TTSYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDE 426
T + V + + GG + + +E G ++I TPGRL D +E+ + + L+LDE
Sbjct: 116 TLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDE 175
Query: 427 ADRMLDMGFEPQIRKIIEQIRPDRQT 504
ADR+L+MGF+ Q+ II ++ R+T
Sbjct: 176 ADRLLEMGFQRQVNYIISRLPKQRRT 201
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 71 WKEFSWRSQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 241
+K+ + + TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 242 ADFGPHLMFVTRVCLV 289
F L V V LV
Sbjct: 111 QPFVSTLANVNSVLLV 126
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG-TTNLQRCTYLVLDEADRMLDMGFE 456
+ GG REQ L +IV+ATPGR+ID L + +L L+LDEADR+L GF
Sbjct: 272 IVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFA 331
Query: 457 PQIRKIIEQIRPDRQTL 507
+I +++ RQT+
Sbjct: 332 TEITELVRLCPKRRQTM 348
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 238
TGSGKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +3
Query: 9 KTMGYKEPTPIQAQGWPIAMSGKNLVGVA 95
+T+GYK+PTPIQA P+A++G++L A
Sbjct: 183 ETLGYKKPTPIQAACIPLALTGRDLCASA 211
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 253 TTSYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDE 426
T V + + GG LE G ++I TPGRL D +++ + + L+LDE
Sbjct: 116 TLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDE 175
Query: 427 ADRMLDMGFEPQIRKIIEQIRPDRQT 504
ADR+LDMGF+ Q+ II ++ R+T
Sbjct: 176 ADRLLDMGFQKQVNYIISRLPKQRRT 201
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHLMF 268
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F L
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 269 VTRVCLV 289
V V LV
Sbjct: 120 VNSVLLV 126
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Frame = +1
Query: 274 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLD 444
T + G K +Q R +I+IATPGRL+D +E T+ L ++DEAD +LD
Sbjct: 439 TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD 498
Query: 445 MGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRI 555
+GF + KII+ + RQ+L PK+ R + ++
Sbjct: 499 LGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQL 535
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +2
Query: 14 NGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 181
+G+ + + L++ K+ +++TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 182 PIALVLAPTRELAQQI 229
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = +1
Query: 256 TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 435
T+ + C+ GG E + LERGV V TPGR+ D +++G+ + LVLDE+D
Sbjct: 117 TNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDE 175
Query: 436 MLDMGFEPQIRKIIEQIRPDRQ 501
ML G + QI + + D Q
Sbjct: 176 MLSKGLKDQIYDVYRALPHDIQ 197
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 89 RSQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHL 262
++Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G H
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 263 MFVTRVCL 286
C+
Sbjct: 118 NIQAHACI 125
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +3
Query: 513 SATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQ 692
SAT P+E+ ++ E ++ D ++I + +L+ VD+ +E K + L L +
Sbjct: 202 SATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTI 261
Query: 693 SQEPGAKTIIFVETKRKAE 749
+Q IIF T++K +
Sbjct: 262 NQ-----AIIFCNTRQKVD 275
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +1
Query: 274 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLD 444
T + G + +Q R +I+IATPGRL+D +E T+ L ++DEAD +LD
Sbjct: 486 TLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD 545
Query: 445 MGFEPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRI 555
+GF+ + KII+ + RQ+L PK+ R + ++
Sbjct: 546 LGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQL 582
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +2
Query: 14 NGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 181
+G+ + + L++ K+ +++TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 182 PIALVLAPTRELAQQI 229
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +1
Query: 265 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN---LQRCTYLVLDEADR 435
+R + + GG Q L IVI TPGR+ LE R +LVLDEADR
Sbjct: 155 LRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADR 214
Query: 436 MLDMGFEPQIRKIIEQIRPDRQTL 507
+LD+GF+ ++R I + + RQTL
Sbjct: 215 VLDVGFQDELRTIFQCLPKSRQTL 238
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +2
Query: 5 CKDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGP 184
CK+ G+++ + + ++ +QTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 185 IALVLAPTRELAQQIQQ 235
ALV+ PTRELA Q+ +
Sbjct: 128 FALVVTPTRELAFQLAE 144
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = +3
Query: 9 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 98
K +G ++PTP+Q P ++G++++G+A+
Sbjct: 74 KELGMRKPTPVQTHCVPKILAGRDVLGLAQ 103
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 322 ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 498
E G ++I TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 192
Query: 499 QT 504
+T
Sbjct: 193 RT 194
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 241
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFE 456
V GG K ++ L +G+ I+IATPGRL+D L+ + + + +++ DEAD +L++G+
Sbjct: 139 VMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYG 198
Query: 457 PQIRKIIE 480
+I +II+
Sbjct: 199 KEIEQIIK 206
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 235
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ +
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYE 122
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 15 MGYKEPTPIQAQGWPIAMSGKNLV 86
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGF 453
+ GG + ++ + I++ PGRL+ +++ T N + + L+LDEADR+LD F
Sbjct: 177 LIGGREGVDVEKERVHEMNILVCAPGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAF 235
Query: 454 EPQIRKIIEQIRPDRQTLSGQLLGPKK*RNLLRIT 558
+ Q+ II Q+ RQTL KK ++L R++
Sbjct: 236 KGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLS 270
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/66 (31%), Positives = 40/66 (60%)
Frame = +2
Query: 29 TDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 208
TD S++ + + ++ ++TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 209 RELAQQ 226
RELA Q
Sbjct: 153 RELAAQ 158
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Frame = +1
Query: 280 VFGGAPKREQARDLERGVEIVIATPGRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMG 450
+ GG +Q R L+ EIV+ATPGRL + + EK L ++ VLDEADRM++ G
Sbjct: 313 IVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERG 372
Query: 451 FEPQIRKIIE 480
+++ I++
Sbjct: 373 HFRELQSILD 382
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Frame = +2
Query: 62 SYVWKEFSWRSQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 196
+Y K+ ++TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 197 LAPTRELAQQIQQ 235
+ PTRELA Q+ +
Sbjct: 285 ITPTRELALQVTE 297
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 286 GGAPKREQARDLERGVE-IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 462
GGA + Q L++ IV+ TPGR+ + + G + C +LVLDE D +L F
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFRED 287
Query: 463 IRKIIEQI 486
I +I+E +
Sbjct: 288 IHRILEHV 295
Score = 35.5 bits (78), Expect = 0.038
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVA 241
+S TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVE 212
Query: 242 ADFGP 256
GP
Sbjct: 213 KLLGP 217
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +1
Query: 241 CRFWTTSYV--RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 414
CR + S V R+ V GG +R Q +LE+GV+++IATPGR + +G L
Sbjct: 471 CRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCA 530
Query: 415 VLDEADRML-DMGFEPQIRKII 477
+LDE D + D FE ++ +I
Sbjct: 531 ILDEVDILFGDDEFEAALQNLI 552
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 95 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 229
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/59 (38%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +1
Query: 310 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 480
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L ++ + +++
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVLQ 216
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGP 256
S TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V P
Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDVFDAIAP 119
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +2
Query: 74 KEFSWRSQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 229
K+ R++TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 334 EIVIATPGRLIDFLEKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 474
EI+++TP + G T + + LVLDEAD +L G+E +R +
Sbjct: 174 EILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSV 224
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Frame = +1
Query: 322 ERGVEIVIATPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIEQIR 489
+R +I+++TP L++ +E K L+ RC Y+V DEAD +L F+ QI ++I +R
Sbjct: 207 DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLR 266
Query: 490 PDRQTLS 510
D + +S
Sbjct: 267 FDEKQVS 273
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +2
Query: 8 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINN----QPPIRRG 175
+D+G R + + K+ ++TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 176 DGP-----IALVLAPTRELAQQI 229
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/78 (35%), Positives = 38/78 (48%)
Frame = +2
Query: 92 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGPHLMFV 271
+QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVARMLAAKSEID 174
Query: 272 TRVCLVVLLKESKPGTWR 325
+ C V+ L + GT R
Sbjct: 175 VKGCTVMALLDG--GTLR 190
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGV--EIVIATPGRLIDFLEKGTTNLQRCTYLV 417
RF T VF G + +DL + IV+ TPGR++ + +L+ + +
Sbjct: 136 RFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFI 195
Query: 418 LDEADRMLD-MGFEPQIRKIIEQIRPDRQTL 507
LDE D+ML+ + +++I + D+Q +
Sbjct: 196 LDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = +3
Query: 510 WSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIG 689
+SAT KE++ + + ++ D ++I + H ++Q E EK KLN LL +
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALD 287
Query: 690 QSQEPGAKTIIFVETKRKA 746
+Q +IFV++ +A
Sbjct: 288 FNQ-----VVIFVKSVSRA 301
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 11 DNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 187
D+G + + + + + ++++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 188 ALVLAPTRELAQQIQQVAADFGPHL 262
ALVL TRELA QI F +L
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYL 141
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGV--EIVIATPGRLIDFLEKGTTNLQRCTYLV 417
RF T VF G + +DL + IV+ TPGR++ + +L+ + +
Sbjct: 53 RFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFI 112
Query: 418 LDEADRMLD-MGFEPQIRKIIEQIRPDRQTL 507
LDE D+ML+ + +++I + D+Q +
Sbjct: 113 LDECDKMLESLDMRRDVQEIFKMTPHDKQVM 143
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = +3
Query: 510 WSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIG 689
+SAT KE++ + + ++ D ++I + H ++Q E EK KLN LL +
Sbjct: 145 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALD 204
Query: 690 QSQEPGAKTIIFVETKRKA 746
+Q +IFV++ +A
Sbjct: 205 FNQ-----VVIFVKSVSRA 218
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGPHL 262
++++G GKT ++L + I P G + ALVL TRELA QI F +L
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRFSTYL 58
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +1
Query: 244 RFWTTSYVRNTCVFGGAPKREQARDLERGV--EIVIATPGRLIDFLEKGTTNLQRCTYLV 417
RF T VF G + +DL + IV+ TPGR++ + +L+ + +
Sbjct: 136 RFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFI 195
Query: 418 LDEADRMLD-MGFEPQIRKIIEQIRPDRQTL 507
LDE D+ML+ + +++I + D+Q +
Sbjct: 196 LDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = +3
Query: 510 WSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIG 689
+SAT KE++ + + ++ D ++I + H ++Q E EK KLN LL +
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALD 287
Query: 690 QSQEPGAKTIIFVETKRKA 746
+Q +IFV++ +A
Sbjct: 288 FNQ-----VVIFVKSVSRA 301
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 11 DNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 187
D+G + + + + + ++++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 188 ALVLAPTRELAQQIQQVAADFGPHL 262
ALVL TRELA QI F +L
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYL 141
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 98 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 226
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 15 MGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKRWPTSCQPL 140
+G+KEPTPIQ Q PI +SG+ A K + C L
Sbjct: 159 LGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +1
Query: 334 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 480
+++I+TP RL ++ +L + YLVLDE+D++ + QI +++
Sbjct: 260 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 235 SCCRFWTTSYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEKGTTNLQRCTY 411
S C+ + + GAP Q L+ E ++ATP RL++ + ++ +
Sbjct: 214 SVCKALKGIGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSL 273
Query: 412 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 507
LV+DE + G+ ++ I + I QT+
Sbjct: 274 LVIDELGSLCSGGYLNAVKSIKQAISSKHQTI 305
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.1 bits (77), Expect = 0.050
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 89 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 253
++ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 289 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM-GFEPQI 465
GAP + + +VI TPG L ++ L LV DEAD ML GF
Sbjct: 203 GAPAATRGAPVS--AHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDS 260
Query: 466 RKIIEQI 486
KI++ I
Sbjct: 261 LKIMKDI 267
>At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase
(AOP1.2) identical to GI:16118887; contains PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 322
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 515 SYLAQRSEETC*GLLGRLHSDQYRIITTFRKSQHSS 622
S L + C L GRLHS +R+I T +K+++S+
Sbjct: 230 SVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYST 265
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 525 PKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENK 662
P++++K D GDYI +G ++ A IL ++D + E ENK
Sbjct: 42 PEQIEKF--DGRGDYI---LGKTKILARFEILDVIDALKIEEDENK 82
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 382 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLS 510
G L++ LVLDEA +D + I+KII Q DR ++
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVT 976
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 382 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLS 510
G L++ LVLDEA +D + I+KII Q DR ++
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVT 1429
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 228 ICCANSLVGAKTKAIGPSPLRI 163
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At5g63800.1 68418.m08007 glycosyl hydrolase family 35 protein
similar to beta-galactosidase GI:7939621 from
[Lycopersicon esculentum]; contains Pfam profile
PF01301: Glycosyl hydrolases family 35
Length = 718
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +1
Query: 187 CFGLGAYQRVSTTNSASCCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 366
C G+ + NS + + WT + V+G P A D+ + +A G I
Sbjct: 236 CNGMKCGETFPGPNSPNKPKMWTEDWTSFFQVYGKEPYIRSAEDIAFHAALFVAKNGSYI 295
Query: 367 D-FLEKGTTNLQR 402
+ ++ G TN R
Sbjct: 296 NYYMYHGGTNFGR 308
>At4g26140.2 68417.m03763 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 636
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 199 GAYQRVSTTNSASCCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID-FL 375
G Y NS + + WT ++ FGGA A D+ V I G I+ ++
Sbjct: 235 GFYCENFKPNSDNKPKMWTENWTGWFTEFGGAVPYRPAEDIALSVARFIQNGGSFINYYM 294
Query: 376 EKGTTNLQR 402
G TN R
Sbjct: 295 YHGGTNFDR 303
>At4g26140.1 68417.m03762 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 728
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 199 GAYQRVSTTNSASCCRFWTTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID-FL 375
G Y NS + + WT ++ FGGA A D+ V I G I+ ++
Sbjct: 235 GFYCENFKPNSDNKPKMWTENWTGWFTEFGGAVPYRPAEDIALSVARFIQNGGSFINYYM 294
Query: 376 EKGTTNLQR 402
G TN R
Sbjct: 295 YHGGTNFDR 303
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,563,838
Number of Sequences: 28952
Number of extensions: 384320
Number of successful extensions: 1280
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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