Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0079
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.9  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    27   3.9  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    26   5.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   5.1  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.7  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   8.9  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   8.9  

>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 395 INFAHSNIFKLTKCNYHYINHVALLYYTISKMCH--NSYS 508
           +NFAH N+  L   N  ++N + L   T+S +C   +SYS
Sbjct: 138 LNFAHENLAPLAPSNQKFLNSLEL---TMSLLCFPPSSYS 174


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 344 FRSLYCQNDNEE*SFSKINFAHSNIFKLTKCNYHYIN 454
           F+  Y  N   E S   I+F  +++F  TKCN HYI+
Sbjct: 98  FKRFYLINSVMEYSPKIISF--TSLFLATKCNDHYIS 132


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 755 NKSLNNARELEDLILAQLIKIPSFNETKIYSQENSTDSDI 636
           +K +NN   +E+L L QL ++PS       S ++ +D ++
Sbjct: 58  SKDVNNNGAVEELSLTQLFEVPSQAAFAKQSSQDISDDEL 97


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 143 FHTLYYFCTVKFIIISTIHN*FCILY 66
           F  L++ C++ F+I   +H+  C++Y
Sbjct: 221 FFVLHHMCSIGFLITIWLHHRRCVVY 246


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 544 HHHRSFILV*KHHNLMFKTFNAYFKLYKSQVISESVLFSCEYILV-SLKDGIFI 702
           H H S + V ++H L  +T +A  +L+KS++  +   F  ++ L  +L+D + I
Sbjct: 156 HTHSSPLTVYRNHLLTCETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLI 209


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 664  EYILVSLKDGIFINCARI 717
            ++I+VSLK+G+F N  R+
Sbjct: 1140 QFIIVSLKEGMFTNANRL 1157


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 213 ITQFYITRFQSLV*HGYPPYNAGFSHVILF-LYCEIY 106
           + QF+   F   + H YP Y + FS +  F L+C I+
Sbjct: 384 LRQFFHNEFPRFLPHAYPYYASCFSVLGAFLLFCGIW 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,018
Number of Sequences: 5004
Number of extensions: 63816
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)