Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0079
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical...    31   0.89 
AF025461-8|AAB71000.1|  286|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical
           protein Y73F8A.26 protein.
          Length = 476

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 389 SKINFAHSNIFKLTKCNYHYINHVALLYYTISKMCH 496
           S I   H+ ++KL + N HY+ H+   ++     CH
Sbjct: 249 SVIRCEHNCLYKLARINGHYVGHLFAAHFEYLHFCH 284


>AF025461-8|AAB71000.1|  286|Caenorhabditis elegans Hypothetical
           protein M01D1.9 protein.
          Length = 286

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 574 KHHNLMFKTFNAYFKLYKSQVISESV-LFSCEYILVSLKDGIFINCARIKSSSSLALFND 750
           K H    +T  ++ KL   +++++   + S   I +SL D +  NC+RI   S +   ND
Sbjct: 170 KIHPTFHRTLTSFQKLSLKRILTQKFQILSIFQIDISLDDLLLTNCSRIHCFSEILSNND 229

Query: 751 L 753
           +
Sbjct: 230 I 230


>AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical
           protein Y36E3A.1 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 466 AILHYLENVP*LIFYV---KYKIMNLIR-RHHHRSFILV*KHHNLMFKTFNAYFKLYKSQ 633
           A L YL +VP  I Y    K K+  L + +   R F     +H++ FK+ N  FKL K +
Sbjct: 49  APLRYLSDVPDKIIYEILSKAKLFELFKIQKVSRGFRSFVNNHHVGFKSINISFKLEKIE 108

Query: 634 VI 639
           ++
Sbjct: 109 ML 110


>Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical
           protein F10F2.7 protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 323 DILSETRFRSLYCQNDNEE*SFSKINFAHSNIFKLT---KCNYHYINHVALLYYTISKMC 493
           + +S+ R+  LYC+N  E  S+SK     S   ++T   +  + Y++   L Y    K C
Sbjct: 411 EAMSDARYAPLYCENILEYFSYSKCPEGFSEFPRVTSGQRWCHKYVHGAPLPYDDAEKKC 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,371
Number of Sequences: 27780
Number of extensions: 348513
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)