Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0079
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07530.1 68414.m00806 scarecrow-like transcription factor 14 ...    31   0.63 
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    30   1.9  
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ...    28   7.8  
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ...    28   7.8  
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ...    28   7.8  

>At1g07530.1 68414.m00806 scarecrow-like transcription factor 14
           (SCL14) identical to GB:AAD24412 from [Arabidopsis
           thaliana] (Plant J. 18 (1), 111-119 (1999))
          Length = 769

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 354 RLRNLVSDKISSINHPKDTFKNLVIAKK*LAGLRKNTAIPPL*HGNLITQFYITRFQSLV 175
           R RNL+ + +  +N P+D    L+  +K    +  N  IP +  GN    F++TRF+  +
Sbjct: 600 RFRNLLDETVL-VNSPRDAVLKLI--RK----INPNVFIPAILSGNYNAPFFVTRFREAL 652

Query: 174 *H 169
            H
Sbjct: 653 FH 654


>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/62 (27%), Positives = 36/62 (58%)
 Frame = -3

Query: 354 RLRNLVSDKISSINHPKDTFKNLVIAKK*LAGLRKNTAIPPL*HGNLITQFYITRFQSLV 175
           R RNL+ + ++ ++ P+DT   L+  +K    ++ +  IP +  G+    F++TRF+ ++
Sbjct: 526 RFRNLLDETVA-VHSPRDTVLKLI--RK----IKPDVFIPGILSGSYNAPFFVTRFREVL 578

Query: 174 *H 169
            H
Sbjct: 579 FH 580


>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains Pfam domains PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 378

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 425 LTKCNYHYINHVALLYYTISKMC 493
           +TKC +++  H AL ++T +K C
Sbjct: 324 VTKCKHYFCEHCALKHHTKNKKC 346


>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains Pfam domains PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 378

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 425 LTKCNYHYINHVALLYYTISKMC 493
           +TKC +++  H AL ++T +K C
Sbjct: 324 VTKCKHYFCEHCALKHHTKNKKC 346


>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein similar to SP|O15541 Zinc finger
           protein 183 {Homo sapiens}; contains Pfam profiles
           PF04396: Protein of unknown function, DUF537, PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
           finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 586

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 425 LTKCNYHYINHVALLYYTISKMC 493
           +TKC +++  H AL ++T +K C
Sbjct: 289 VTKCKHYFCEHCALKHHTKNKKC 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,981
Number of Sequences: 28952
Number of extensions: 298133
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)