Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0078
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   3.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 481  QCVPFRVPF-SNGAYRVHLASVPSVSCGIV 395
            +C     PF S GAYR HL+ +  V  G++
Sbjct: 1055 KCAFCDTPFISKGAYRHHLSKMHFVKDGVI 1084


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 692 SEHDRGRRPYLSDISPVSGIDMKKPALWTCPPVSASN-PGRLG 567
           + H     PY +   P +GI ++ P L   PPV+ +  P  LG
Sbjct: 170 THHYARYHPYPNFGVPPAGIPLQNPGLNLNPPVTQTQLPLNLG 212


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 357 VPECEEDPHKNNYTIPHETDGTLAKCTRYAPFENGTLNGTHCSPH 491
           + EC+  P +N  T          KC +    +N  LN   C P+
Sbjct: 185 INECDSAPCQNGGTCLDLIGSYSCKCPKGFQGQNCELNVDDCKPN 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,399
Number of Sequences: 336
Number of extensions: 4272
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)