Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0078
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 28 1.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.4
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 2.4
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc... 27 3.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 3.2
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 5.5
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 26 7.3
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 26 7.3
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 26 7.3
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 25 9.6
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 250 YRTVLKYSKYRQRSLSYSAFS 188
YR+V KY K RQ++L SA+S
Sbjct: 529 YRSVQKYDKMRQQALENSAYS 549
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 467 KRYALFASLLRHFNKIECDSFVYLEEHSIVKEFD 568
KR A+ FN+ D +L +HSI+K+ D
Sbjct: 547 KRKAIIIEGAELFNESPSDGIAFLTQHSIIKQSD 580
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 614 LWTCPPVSASNPGRLGRTL*QCYVLPNKQTNRIQFC 507
LW PV S GR RTL C VLP+ + Q C
Sbjct: 23 LWVPTPVGRS--GRKHRTLKMCIVLPDTGYDVTQVC 56
>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 FNKIECDSFVYLEEHSIVKEFDLACQDW-KRSLVGT 607
F+ E +S + + H V +FD+ Q W K S+ GT
Sbjct: 18 FHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGT 53
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 737 NGQGSYYAEHAVRDRSEHDRGRRPYLSDI--SPVSGIDMKKPALWTCPPVSASNPG 576
NG+ A++ V RS R R L I + +D++KP L + SNPG
Sbjct: 253 NGETEVSAKNHVPHRSSRRRRRHQRLIPIIYETLEQMDLRKPVLVNAEVQTDSNPG 308
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 321 NFEAMDLKYRCTVPECEEDPHKNNYTIPHETDGTLAKCTRYAP 449
N +D Y+C VP C++ N H+ G + T P
Sbjct: 342 NLVVVDKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTP 384
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 339 GP*LRNYRQTNTFRRGKPGTISTCNSK 259
GP LR Y+ N FR G IS+ ++K
Sbjct: 55 GPQLREYQLKNAFRPKLEGVISSLDNK 81
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 681 IVFASVANGVFGIIRALSVNYNM 749
I +++AN V GI+RAL V +N+
Sbjct: 594 IWISTIANEVVGILRALGVIFNL 616
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 267 YTLILFPVFLAGMYSSVYNFEAMDLKY 347
+ L+LFP+F + + + Y F +L Y
Sbjct: 276 WVLLLFPMFFSSNWFTTYQFNDFNLAY 302
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 335 HSFEIIDRRIHSGEENREQYQRVIPNINLPNGPK 234
H F I + + S EE +E ++++P +P P+
Sbjct: 200 HDFVIPEDEMLSEEEEQEVEKQILPKFVVPESPR 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,244,761
Number of Sequences: 5004
Number of extensions: 68544
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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