Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0078
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0707 + 10569261-10571276                                         32   0.62 
01_06_1826 - 40164306-40164355,40165019-40165095,40165796-401658...    29   5.8  
10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665     28   7.6  
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    28   7.6  

>03_02_0707 + 10569261-10571276
          Length = 671

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 487 GEQC-VPFRVPFSNGAYRVHLASVPSV 410
           G++C +P R+P SN  +R HL+SV S+
Sbjct: 631 GDECAMPQRIPMSNSGFRTHLSSVLSL 657


>01_06_1826 -
           40164306-40164355,40165019-40165095,40165796-40165890,
           40166028-40166099,40166200-40166287,40166481-40166557
          Length = 152

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 190 KKQNNSVTVDDILSILGPFGR 252
           KK  N+VTVDD++ ++ P GR
Sbjct: 116 KKGRNNVTVDDLIHVITPKGR 136


>10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665
          Length = 269

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 324 FEAMDLKYRCTVPECEEDPHKNNYTIPHETDGTLAKCTRYAPFENGTLNG 473
           F A  L +R    E + +  K  + +  + +G L++C++  PF  G   G
Sbjct: 111 FSAWILVFRSKTEEEKAEAVKQTFAVVEKLEGALSECSKGKPFFGGDTVG 160


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 384 KNNYTIPHETDGTLAKCTRYAPFENGTLNGTHCSPHYFDTSTKLNAIRLFIWKNI 548
           K  + +P      L +   Y  FE     G   S HYFD   KL   +  +++NI
Sbjct: 366 KGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,700,831
Number of Sequences: 37544
Number of extensions: 422203
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)