Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0078
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)                      30   1.9  
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.5  
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  
SB_40083| Best HMM Match : Homeobox (HMM E-Value=0.00011)              29   5.9  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.9  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)
          Length = 1013

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 624 EAGIVDVPTSERFQSWQARSNSLTMLCSS 538
           E G+V VP S R Q   AR+ S TM+C S
Sbjct: 92  EKGVVSVPASGRTQDINARAVSPTMVCYS 120


>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 624 EAGIVDVPTSERFQSWQARSNSLTMLCSS 538
           E G+V VP S R Q   AR+ S TM+C S
Sbjct: 252 EKGVVSVPASGRTQDINARAVSPTMVCYS 280


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +3

Query: 261 WNYTLILFPVFLAGMYSSVYNFEAMDLKYRCTVPECEEDPHKNNYTIPHETDGTLAKCTR 440
           ++ T I+FP    G Y+++ NF A ++     +P+      K  +T    +DG   K  R
Sbjct: 559 FSMTRIIFPEEKPGFYATITNFTAANVSDWTIIPQWTSTGAKGLFT---SSDGFNPKIGR 615

Query: 441 YAPFENGT 464
           +    +GT
Sbjct: 616 FTAVLSGT 623


>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1494

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 405 HETDGTLAKCTRYAPFENG--TLNGTHCSPHYFDTSTKLNAIRLFIWKN 545
           H T GT    TRY  + N   TL+G   S  +   ST ++  R  ++ N
Sbjct: 279 HATRGTTISTTRYTVYNNQHYTLHGVQQSALHATRSTTISTTRYTVYNN 327


>SB_40083| Best HMM Match : Homeobox (HMM E-Value=0.00011)
          Length = 113

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 369 EEDPHKNNYTIPHETDGTLAKCTRYAPFENGTLNGTHCSPHYFDTST 509
           +E+ +  N  + +  +  + + TR+ P++   LN T  S  Y D ST
Sbjct: 15  DENSYGENMRMNNRANSQITR-TRFTPYQTQVLNETFSSSAYIDAST 60


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 495 SSEANNAYRLGYRSQTERTGYIWLAYRPFRAVSCSCFYAGPPHILELYICI 343
           +++A+N    G  +Q ER   I L +R    V C+C Y+   +  ++ +CI
Sbjct: 324 AADASNVSTSGV-TQYERERRISLTFRKILHVPCTCKYSSKNNAFDVCLCI 373


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +3

Query: 318  YNFEAMDLKYRCT---VPE-CEEDPHKNNYTIPHETDGTLAKCTRYAPFENGTLNGTHCS 485
            YN  A  L + C    VP+ CE    +      +++D +      Y P+    ++G  C 
Sbjct: 2943 YNNSACPLGHYCLSAQVPQLCEAGTRRKVVGARNQSDCSPCPGGHYCPYNETNIDGIPCR 3002

Query: 486  PHYF 497
            P YF
Sbjct: 3003 PKYF 3006


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,320,583
Number of Sequences: 59808
Number of extensions: 510210
Number of successful extensions: 1336
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)