Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0078
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10710.1 68416.m01289 pectinesterase family protein contains ...    28   6.4  
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom...    28   6.4  

>At3g10710.1 68416.m01289 pectinesterase family protein contains
           similarity to pectinesterase GB:AAB57671 [Citrus
           sinensis]; contains Pfam profile: PF01095 pectinesterase
          Length = 561

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 724 RIMPNTPFATEANTIAAAGRTCP 656
           RI+P  P   + NTI A GRT P
Sbjct: 418 RILPRRPMKGQQNTITAQGRTDP 440


>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
           domain-containing protein similar to nuclear protein
           5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
           PF02373: jmjC domain
          Length = 883

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 239 PKILKISSTVTELFCFFSGSILNITHTRNFLLKKKNFQTMRRIKIKVK 96
           P  L    +VT+L C  S ++  +THT    L ++   +++ +K K K
Sbjct: 663 PDELGRGDSVTKLHCDMSDAVNILTHTAEVTLSQEQISSVKALKQKHK 710


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,705,124
Number of Sequences: 28952
Number of extensions: 348234
Number of successful extensions: 915
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)