Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0076
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    26   6.9  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   9.2  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 638 KSTAQNNLSIDVIHIGHM 585
           K   +NN++ID+IHIG +
Sbjct: 130 KRMKKNNVAIDIIHIGEL 147


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 231 YVSIPNGNKLLYKRKVHIL 175
           +  + NGN+LL KRK+H L
Sbjct: 333 HYELDNGNRLLSKRKLHDL 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,028
Number of Sequences: 5004
Number of extensions: 73353
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)