Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0076
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0841 - 28574497-28574883,28575815-28576188,28576262-285764...    29   4.1  
02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642...    29   4.1  
03_05_0763 - 27528425-27528949                                         28   9.5  
02_05_0522 - 29744368-29745534                                         28   9.5  
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030...    28   9.5  

>04_04_0841 -
           28574497-28574883,28575815-28576188,28576262-28576439,
           28576816-28576896,28578134-28578361,28578460-28578579,
           28578646-28579353,28579471-28579588,28579686-28579978,
           28580101-28580169
          Length = 851

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +3

Query: 645 IHRQISRSICGVPRGFGRVVTSIEAHCECISLELWSFSL 761
           ++R + RS  G+  G GR + +++  CEC++L + S +L
Sbjct: 556 LYRPLLRS--GLALGAGRWIATLQRQCECLALLMSSIAL 592


>02_02_0654 -
           12662931-12663200,12663296-12663550,12664097-12664268,
           12664354-12664581,12664727-12664860,12665018-12665101,
           12665332-12665538,12665641-12665973,12666175-12666281,
           12666439-12666593,12666778-12666810,12666924-12666972,
           12667152-12667312,12667413-12668313,12668391-12668481,
           12668558-12668749
          Length = 1123

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 477 FGQKNVIDMSIQIDLNIIVSFKEYGSKPALNKG*YLTCYLSKMSFRRVLW 328
           F  K      IQ   N+   +K Y   P+ N   YLT +L  + F  V W
Sbjct: 837 FATKYSQSFYIQCVANLWKQYKSYWKNPSYNSLRYLTTFLYGLFFGTVFW 886


>03_05_0763 - 27528425-27528949
          Length = 174

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 638 FGNSSANFKIYLRSTSWIW*GCH 706
           F N + +F+I L ST +IW G H
Sbjct: 58  FDNDTGDFEIRLTSTCYIWFGSH 80


>02_05_0522 - 29744368-29745534
          Length = 388

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 670 FAEYLV--DLVGLSLQSKLIVSAFPWNF 747
           F++Y V  D+VGL L S L+V  F W +
Sbjct: 119 FSDYSVLDDIVGLVLHSSLLVPYFSWKY 146


>01_05_0677 -
           24202037-24202444,24202499-24202795,24202960-24203009,
           24204534-24204589,24205751-24206040,24206100-24206488,
           24210578-24210818
          Length = 576

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/52 (23%), Positives = 33/52 (63%)
 Frame = -3

Query: 468 KNVIDMSIQIDLNIIVSFKEYGSKPALNKG*YLTCYLSKMSFRRVLWLPMEY 313
           +++ D+   + ++ IV+ K++ ++  + +  Y TC +S+  FRR+L + +++
Sbjct: 409 ESLYDLFKTVGIDRIVTLKQHYNEDLIRQF-YATCSISRRQFRRLLNIRLDF 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,179,638
Number of Sequences: 37544
Number of extensions: 412429
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)