Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0076
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17129| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-07)                 30   1.8  
SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         29   4.2  
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_17129| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-07)
          Length = 350

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 617 DYFVPLIFGNSSANFKIY 670
           DYFVPL++ NS  NF +Y
Sbjct: 235 DYFVPLLYANSFINFVLY 252


>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 368 PVIYLRCRSEEFCGCQWNTKS 306
           PV+Y+RC   ++C   W+ KS
Sbjct: 359 PVLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 368  PVIYLRCRSEEFCGCQWNTKS 306
            PV+Y+RC   ++C   W+ KS
Sbjct: 1128 PVLYIRCEDPKYCPVLWHYKS 1148


>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 492 VAICAFGQKNVIDMSIQIDLNIIVSFKEYGSKPAL 388
           V I +FG K    +S  +  N+++SF + G KP L
Sbjct: 157 VGIVSFGDKTKQILSRTLGKNMLMSFMDVGKKPPL 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,237,137
Number of Sequences: 59808
Number of extensions: 513485
Number of successful extensions: 872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)