Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0074
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0172 + 26138238-26138474,26138712-26139854                       31   1.1  
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853...    29   4.4  

>05_06_0172 + 26138238-26138474,26138712-26139854
          Length = 459

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 449 VNESEIQPSLTSDCDGR*GCNGIRHEQSVECITK 348
           ++ESE Q S   D     GCNG  H + V+ IT+
Sbjct: 412 LDESERQESPKDDVKAELGCNGFHHREKVDQITE 445


>01_01_0014 +
           84379-84600,84737-84830,84935-85086,85212-85299,
           85348-86681,87291-87398,87500-87583
          Length = 693

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 587 YNRSLPFLS*NAIHFTLEAHHPYLTLRNPVTPLHGVHSIRHVLLLRVNESEIQPSL 420
           Y R LPF++ N  H    +HH  L+  + +T   G H  +   L++  +S    +L
Sbjct: 175 YKRMLPFVTENGYHIANLSHHVLLSTFSEITSQEG-HRTKIPRLVQEKQSSTDENL 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,339,688
Number of Sequences: 37544
Number of extensions: 374240
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)