Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0074
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_15447| Best HMM Match : C1_1 (HMM E-Value=0.11)                     28   7.9  
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)                   28   7.9  
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_35063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 391 AMELDTSSRLNV*QKMGDFDSFRTLENNWRFILEFRTSLFTRIV 260
           ++E D S  LN   K G+FD++ TL       LE+    FTR V
Sbjct: 81  SIESDKSKALN--SKRGNFDAYMTLSRKSTAELEWLNKQFTRYV 122


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 692 LINIMMTTLISLFYVMMFNLCPNIGVCY 775
           L+++    L+S+ Y +   +CP++ VCY
Sbjct: 529 LLSVRYCPLLSVQYCLSITVCPSLSVCY 556


>SB_15447| Best HMM Match : C1_1 (HMM E-Value=0.11)
          Length = 316

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 230 KYPLTLQKVRYYSCEERCSKFKN 298
           +Y +    V Y+SCE+RC + +N
Sbjct: 248 EYDIVDDHVGYFSCEDRCERLRN 270


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -1

Query: 521 YLTLRNPVTPLHGVHSIRHVLLLRVNESEIQ 429
           ++ ++  +TPL GVH+I+ + L++V E   +
Sbjct: 30  FMIVKENLTPLLGVHTIQKMKLIKVQEENFE 60


>SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)
          Length = 997

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -1

Query: 521 YLTLRNPVTPLHGVHSIRHVLLLRVNESEIQ 429
           ++ ++  +TPL GVH+I+ + L++V E   +
Sbjct: 202 FMIVKENLTPLLGVHTIQKMKLIKVQEENFE 232


>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 325  GKNRNHPSFVIHSTDCSCLIPLHPYLPSQS 414
            GK +N P+ +  S  CSC +PL   +  Q+
Sbjct: 1080 GKQKNVPTALAESMHCSCSLPLKTQVSDQA 1109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,484,601
Number of Sequences: 59808
Number of extensions: 463155
Number of successful extensions: 1097
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)