Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0071
         (799 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    27   0.17 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.7  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.9  

>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 613 VWPLALISGCFLNNNQPMWEKKNPRVALWGSASVSNICGACDDHGPNPLRH 461
           V+P  +IS C+    + +W K    + + G   +      CDDH   P RH
Sbjct: 216 VFPALIISACYAVIVRTIWSKSKLLIPV-GHIPIRQ----CDDHRDRPPRH 261


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 709 HMYQHCGEKQFGTPSTSANF 768
           H+  H GEK+F  P  +  F
Sbjct: 365 HLRTHTGEKRFACPICNKRF 384


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 591 EIKAKGHTVDVNDLRNDP 644
           E+K  GH + +N ++ DP
Sbjct: 500 EVKFLGHILTINGIKADP 517


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,626
Number of Sequences: 336
Number of extensions: 5461
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)