Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0071
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    63   4e-11
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   1.0  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    27   2.4  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   9.5  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   9.5  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +3

Query: 510 ETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQILMPL 689
           +TD DP+N  +GF+++H+GW+++ ++P    +    DV+DL +DP + F  +++  +   
Sbjct: 155 DTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHFLPIASF 211

Query: 690 ACFIMPT-YVPTLWGETVWNSFY 755
             FI P+ +   LWG+     FY
Sbjct: 212 MAFIFPSLFCGLLWGDYRGGYFY 234



 Score = 49.2 bits (112), Expect = 7e-07
 Identities = 27/63 (42%), Positives = 36/63 (57%)
 Frame = +2

Query: 242 CDSVLILHVGGVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKS*KLGCH* 421
           C  +  L +  +YG  +F      +T IFAI  Y  SGLGITAG HRLW+H++ K     
Sbjct: 67  CMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPL 124

Query: 422 EYY 430
           EY+
Sbjct: 125 EYF 127



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +1

Query: 295 PFQSHVEDFYIRHIFVLVFGIGYHSWRAQTLGTQVLKARLPLRILLTIFNTIAFQDAVVD 474
           P Q+    F I  I+    G+G  +   +    +  KA+ PL   L      AF+ ++  
Sbjct: 85  PLQTKTLIFAI--IYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRW 142

Query: 475 WARDHRMHHKY 507
           W+RDHR HH+Y
Sbjct: 143 WSRDHRAHHRY 153


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 287  YLFLFKAMWRTSIFAIFLYLCSGLGITAGAH---RLWAHKS*KLGCH*EYYSPYSILSLF 457
            Y   FKA     IF  FL++  G+G+  G +   + W+  + +LG + + Y    I +LF
Sbjct: 891  YWTYFKACSLFLIFLYFLFIIGGIGMNVGTNVWLKHWSEVNTQLGYNPKPYFYLGIYTLF 950


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 653 FSEEVLPNFNAFSLFHHAYICTNIVGRNSLELLLRLRIFRYVYVLN 790
           FS E   NF+A SL  HA I    +G+ ++ +LLR  I    Y LN
Sbjct: 272 FSSE--KNFDAASLKEHAGIYVPSIGKVTIAMLLRNLIRLTSYQLN 315


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 475 WARDHRMHH-KY*RPMRTPTTQPEDSSFPTLAGCC*GSIPKSKP 603
           W  +   HH K+ RP+    T+P+   +     C  G  P+  P
Sbjct: 364 WKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVP 407


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 671 PNFNAFSLFHHAYICTNIVGRNSLEL 748
           P+FNA  L +HAY+  + V  + LE+
Sbjct: 312 PDFNARKLVYHAYVEQSAVINDLLEI 337


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 120 QRKQEASWVLYEADANNLPEDAPPHVPPSAEKRPWKI-VWRN 242
           QR+ E+++ L E D     E +    PP + K P  +  W N
Sbjct: 11  QRRDESAYRLGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,747,495
Number of Sequences: 5004
Number of extensions: 88068
Number of successful extensions: 257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)