Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0071
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0002 - 15280292-15281550,15282714-15282840 32 0.46
11_01_0535 + 4234282-4235082 29 3.2
10_08_0445 + 17989438-17990895 29 3.2
07_03_0926 - 22639775-22640779 29 4.3
09_04_0357 - 16933446-16933512,16933895-16934047,16935341-169354... 29 5.7
05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319... 29 5.7
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562... 28 7.5
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 28 9.9
06_02_0024 - 10714741-10716241,10716774-10717840 28 9.9
05_05_0017 + 21546434-21546841 28 9.9
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 189 PHVPPSAEKRP---WKIVWRNVILFLFCMSVVFMEGTCSF 299
P PP A++RP + +WR V+L C+S+V CS+
Sbjct: 140 PPAPPGAKRRPVRPLRSLWRVVLLCTECLSLVRSAAVCSY 179
>11_01_0535 + 4234282-4235082
Length = 266
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 311 WRTSIFAIFLYLCSGLGITAGAHRLW 388
W + +A FLY C LG A RLW
Sbjct: 220 WTPAAWAFFLYTCVNLGPRARDQRLW 245
>10_08_0445 + 17989438-17990895
Length = 485
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +3
Query: 156 ADANNL-PEDAPPHV--PPSAEKRPWK 227
A A N+ P +PPHV PP+ +RPW+
Sbjct: 407 ATATNMTPPPSPPHVRAPPAPARRPWR 433
>07_03_0926 - 22639775-22640779
Length = 334
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 470 WIGPVIIACTTNIRDRCGPPQRNPRILLF 556
W G V++A I DR PP P+IL F
Sbjct: 162 WAGAVLVAPMCKISDRIRPPWPLPQILTF 190
>09_04_0357 -
16933446-16933512,16933895-16934047,16935341-16935440,
16935540-16935675
Length = 151
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 269 GGVYG-GYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKS*KLGCH*EYYSPYSI 445
G V+G G+ F A+ +S+ FL+ G+ + A A ++G +YYSPY
Sbjct: 17 GAVFGAGWWFWVDAVVCSSVQVSFLHYLPGIFASLAALMFNAVNKDEIGY--DYYSPYGD 74
Query: 446 LSLFRMP*WI 475
S +R+ W+
Sbjct: 75 DSEWRVKLWL 84
>05_01_0406 +
3197189-3197389,3197491-3197628,3198463-3198544,
3198658-3198734,3198829-3198935,3199367-3199505,
3200602-3200718,3200850-3200941,3201096-3201162,
3201249-3201355,3201468-3201546,3201751-3201894,
3202095-3202235
Length = 496
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +3
Query: 528 HNATRGFFFSHIGWLLLRKHPEI----KAKGHTVDVNDLRNDPILRFQKKYYQILMPLAC 695
HN T G HI WL + + I A VN++ D + F KKY+ + +A
Sbjct: 148 HNLTYGIDLDHIRWLGVLQRIAIGYFLAAISEIWLVNNISVDSAISFVKKYFMEWI-VAV 206
Query: 696 FIMPTYVPTLWGETVWN 746
I YV L G V N
Sbjct: 207 MISALYVGLLLGLYVSN 223
>03_02_0101 -
5623661-5623669,5623756-5624408,5624504-5624640,
5626032-5626609
Length = 458
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 272 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 379
G GY L+ +W T + A+ L + LG+ G H
Sbjct: 97 GAAAGYQLLWLLLWATVMGALVQLLSARLGVATGKH 132
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 87 NQYIVSVKMPPQRKQEASWVLYEADA--NNLPEDAPPHVPPSAEK 215
+Q +VS+ +++ E + Y+ D + + D+ PH+PPSA++
Sbjct: 437 HQTVVSLPPAVEQRDEDLQLQYDTDFWDDGMEVDSRPHLPPSAKR 481
>06_02_0024 - 10714741-10716241,10716774-10717840
Length = 855
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 186 PPHVPPS--AEKRPWKIVWRNVILFLFCMSVVFMEGTCSFSKPCG 314
PP PP AE++PW+ R +L L + G FS P G
Sbjct: 5 PPPPPPGNVAEEQPWEYTLRKYLLLLATLVATVAYG-AGFSPPGG 48
>05_05_0017 + 21546434-21546841
Length = 135
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +1
Query: 448 IAFQDAVVDWARDHRMHHKY*RPMRTPTTQPEDSSFPTLAGCC*GSIPKSKPKAIPS 618
+A A VDWAR R HH P P S P L C P P + P+
Sbjct: 28 LAVPAAEVDWARQLRHHHGASPASDAPAPSPAPLSTPEL---CRPGEPVPAPSSSPA 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,764,909
Number of Sequences: 37544
Number of extensions: 599148
Number of successful extensions: 1711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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