Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0070
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    26   7.2  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   9.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 26  IYNTKWKEILSCENYQWDHFI 88
           +Y T+WK I S E   W+ +I
Sbjct: 228 LYQTRWKRINSEEKRNWEEWI 248


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 483 NQNLDTKNTINIQIYITEQLNN*NLPTL**SLVMTILVTVLKIQNHL 623
           N NL+TKN I+I   ++E   N NLP    + V   L T+++I + L
Sbjct: 101 NFNLETKNLISISKKLSE---NENLPVSKIAEVTNELDTLVRINDQL 144


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 313  STSKSVATVGLILPDVLHSSREFQN--MFVLKFLHHLVSSSNARCYTSDENDHFEDL 149
            +TSK    +   + +++ SS  F+N  +  L+ L  +  + N  C +  + D F DL
Sbjct: 1200 NTSKIFTEISKFVREIISSSNSFKNYLLVCLRMLLEVAKNVNTYCESRQQKD-FIDL 1255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,712
Number of Sequences: 5004
Number of extensions: 66390
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)