Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0070
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +2

Query: 542 KQLKSADPLIIFSNDNISNGPKDSKSFGHKTTAQVISYERNSAYRSTLRTEELPNIS 712
           K L   + + ++SND    G + + +      + V+ YE+NS Y ++L + ++P ++
Sbjct: 478 KTLDEMEAMSLYSNDGDFTGTEITANGPVSVYSGVMRYEQNSQYCTSLMSSQIPEVN 534


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +1

Query: 64  KLPMGS-LYNIINILE---INDSWQKVMAWIPTNPQSDHFHRKYNSEHLRMIQDDAKISK 231
           +LP GS  YN+ +  +   +++  Q+ M++   +   +  +RKY  +H +    + ++SK
Sbjct: 221 ELPKGSECYNLSHSFDRHFVSNPMQEFMSYGKVDFAIERMYRKYQGQHNKQYDSEHEVSK 280

Query: 232 R 234
           R
Sbjct: 281 R 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,192,096
Number of Sequences: 59808
Number of extensions: 460485
Number of successful extensions: 1046
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)