Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0070
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57880.1 68418.m07240 expressed protein  ; expression support...    30   2.1  
At1g73800.1 68414.m08544 calmodulin-binding protein similar to c...    29   2.7  
At3g59110.1 68416.m06590 protein kinase family protein contains ...    28   6.3  
At4g16820.1 68417.m02539 lipase class 3 family protein similar t...    28   8.3  
At1g79620.1 68414.m09283 leucine-rich repeat transmembrane prote...    28   8.3  

>At5g57880.1 68418.m07240 expressed protein  ; expression supported
           by MPSS
          Length = 385

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 226 KFLHHLVSSSNARCYTSDEND 164
           KF +H  SSS +RCY S E+D
Sbjct: 29  KFQNHQSSSSTSRCYVSSESD 49


>At1g73800.1 68414.m08544 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 207

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 169 FHRKYNSEHLRMIQDDAKISKRTCSEI--LLTNGVRQVGSDLQLQHS*MCL 315
           FH+K +S H+  +QD  K+S     E+  +L  G+     ++ L+H+  C+
Sbjct: 18  FHKKLSSRHINTVQDFLKLSVVDVDELRQILGPGMSDRKWEVTLKHARECI 68


>At3g59110.1 68416.m06590 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 512

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 538 CSVM*IWMLIVFLVSKFWLSFKLTSLPSNGILSPFS 431
           C V+  ++++VF +   W++F+  S  S+  L PFS
Sbjct: 30  CLVVGTFVVLVFCILSLWIAFRRKSRRSSHKLLPFS 65


>At4g16820.1 68417.m02539 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 517

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 IPTNPQSDHFHRKYNSEHLRMIQDDAKISKRTCSEI 249
           IPT P S    RK N EHLR +++  + S  +   I
Sbjct: 28  IPTKPLSVSPARKTNKEHLRNLENVLRTSSNSIDHI 63


>At1g79620.1 68414.m09283 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 971

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +1

Query: 37  KMERNTELRKLPMGSLYNIINILEINDSWQKVMAWIP 147
           +++RNT   K+P  +L N+ NI+E+N +  K++  +P
Sbjct: 255 RLDRNTLTGKVPE-NLSNLTNIIELNLAHNKLVGSLP 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,289,274
Number of Sequences: 28952
Number of extensions: 325027
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)