Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0069
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    29   0.69 
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    27   3.7  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    26   4.9  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   6.4  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   6.4  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   8.5  
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    25   8.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   8.5  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +3

Query: 300 NADETDKALGLWTLLQEESEVPSNQFLVYLGNHLKSKN 413
           N D   KA  L  LL   S VPS  F V   +HLK  N
Sbjct: 567 NEDHVKKAEHLEPLLNVSSSVPSKNFTVSSPDHLKYGN 604


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 127 RILETPGLQARHRRLDDACQRYVEEG-KSEYLEGLLEATKELS 252
           R  ETPG  AR R L    +  V+ G +SE L  LLE  KEL+
Sbjct: 89  RANETPGCIARRRNLLRLYETIVDAGVRSELLLSLLE-RKELT 130


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 489 VTPKVPQNQQRPKSPQ--TSRPLLKTETW-HKQWTSCL 593
           V P VP+ +  PK+P+    +P      W H  W  C+
Sbjct: 31  VVPSVPERKWDPKAPKHIQEQPWTMQNWWRHLNWLHCM 68


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 151 QARHRRLDDACQRYVEEGKSEYLEGLLEATKE 246
           QA  + L+D      EE K  Y EGLL A ++
Sbjct: 223 QALKKTLEDTWNNLTEEEKKPYHEGLLAAREK 254


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 357 EVPSNQFLVYLGNHLKSKNRDVPFIIPEKIEKVQSKKEDI 476
           +VP + F+ YL  H   +  D+  +    IEK ++    I
Sbjct: 867 DVPYDSFIPYLPTHFNEEESDIDSLSSSLIEKPRASSSPI 906


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +1

Query: 205  KSEYLEGLLEATKELSQ-LIAQTSSTIYSLHTVMPMKPIKP----SDYGHCFKKKAKYRV 369
            +SE +    +  K ++Q  ++   ST+   H +      K     +D  H FKKKAK   
Sbjct: 951  RSEPVSTTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAANDILHLFKKKAKSEQ 1010

Query: 370  TNFLSTSETI 399
            +N  S+S +I
Sbjct: 1011 SNAKSSSSSI 1020


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 723 LRFVFSLIFFPSC*IFSTFPS--SAKFFNKYL 634
           + F FS IFF S  +F  + S  S  FF KYL
Sbjct: 15  ISFTFSSIFFSSLILFLVYKSVLSKLFFIKYL 46


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 339  VSIVRGLYRFHRHYSM*RVNGRRCLSDQLRKFFRCLK 229
            ++ +RGL + HRHY+  +V   R LSD  R   R +K
Sbjct: 1513 IAFLRGLIQDHRHYTGSQV-ADRILSDFPRHLSRFVK 1548


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 252 SIDRSNIFYHLLVTYCNADETDKALGLWTLLQEESEVPSN 371
           + DRS +    L TY   + TD A     LL+ +  V S+
Sbjct: 98  NFDRSKLLVFFLATYGEGEPTDNAEAFLQLLEGDDTVFSS 137


>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 662 EGNVEKIQQLGKNISENTKRKVTY 733
           +G   K ++ GKN +EN KR++TY
Sbjct: 5   KGKGGKNRRRGKNENENEKRELTY 28


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/51 (19%), Positives = 23/51 (45%)
 Frame = +3

Query: 396 HLKSKNRDVPFIIPEKIEKVQSKKEDIIQKIVTPKVPQNQQRPKSPQTSRP 548
           H ++   D  ++   K E   + +  + +  +  K P  + +P+   TS+P
Sbjct: 412 HKETNKIDKLYVSENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKP 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,920
Number of Sequences: 5004
Number of extensions: 66488
Number of successful extensions: 244
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)