Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0068
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   2.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.2  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 22  PYMTCPGNHEEKYNFSNYVNRFSMPGPDSNLYYSFDL--GPVHFVSVSTE 165
           PY T    +++ Y  S Y N      PDS   Y  +L   P  F SV+++
Sbjct: 368 PYST--PEYDDTYMDSGYTNEIDFSFPDSVSDYPLELKGSPDGFESVTSQ 415


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 301 MGRWPNSIIQGRFDLFQGC 245
           +GR+P  ++ G+ DLF  C
Sbjct: 23  LGRFPCLLLNGKXDLFARC 41


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 58  YNFSNYVNRFSMPGPDSNLYYSFDLGPVHFVSVSTEVYY 174
           YN++N   +++    +  LYY   +  +  + V   VYY
Sbjct: 322 YNYNNNNYKYNYNNYNKKLYYKNYIINIEQIPVPVPVYY 360


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +2

Query: 443 ILALVR*CCVQWYRGTLHQSWGPVHIVTGSAGCQESTDPFNYPAAAWSAFRSTDYGY 613
           I++LV  CCV W   T      P ++   S    +    F  P    S+F     G+
Sbjct: 69  IMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMIGW 125


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +2

Query: 443 ILALVR*CCVQWYRGTLHQSWGPVHIVTGSAGCQESTDPFNYPAAAWSAFRSTDYGY 613
           I++LV  CCV W   T      P ++   S    +    F  P    S+F     G+
Sbjct: 69  IMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMIGW 125


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 352 TRVSSTLQSMSLELLQYMGRWPN 284
           T  +STL S   +LL   G W N
Sbjct: 654 TLAASTLYSKRPDLLHLFGSWSN 676


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 352 TRVSSTLQSMSLELLQYMGRWPN 284
           T  +STL S   +LL   G W N
Sbjct: 654 TLAASTLYSKRPDLLHLFGSWSN 676


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 352 TRVSSTLQSMSLELLQYMGRWPN 284
           T  +STL S   +LL   G W N
Sbjct: 654 TLAASTLYSKRPDLLHLFGSWSN 676


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,965
Number of Sequences: 438
Number of extensions: 5435
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)