Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0067
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    33   0.034
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    29   0.97 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    28   1.7  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      27   3.0  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    26   6.8  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   6.8  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   6.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.0  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   9.0  

>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 411 FVSFTRVCEYFWCHITIRQWSIHKLLVNVINSYSKKRIAFWTETNEKFVIVLTFLKLYV 235
           FV F++  E  WC +T+  WS  KLL  +           WT +   + I L+ + LY+
Sbjct: 65  FVHFSKWVELAWCFLTLATWSFMKLLKTLRIVIYICTSDHWTHSLRFYYIELSKILLYL 123


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 367 DMTPKVFTNSRETNKRSMVRSGEDAGRHRGRTKRS-NNGGDGQ 492
           D TPK+ +N+R ++KR  V   + +G+ RGR  R    GG G+
Sbjct: 336 DGTPKLNSNTRGSSKRPSVNRSQGSGQ-RGRGGRGFYRGGRGR 377


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 203 NVVFFFIYYRNTYNFRNVKTITNFSFVS 286
           N+V  F    N   FRN+ TIT+FS +S
Sbjct: 281 NIVRDFGINENLLEFRNINTITDFSQIS 308


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 499 RLARLVYG---YPTPEIFWYRGLNGPMVPYS-STLYEARENV 612
           R ARLV G   YP P  FW + +   M+    + +YE  + V
Sbjct: 149 RYARLVAGVQYYPIPHFFWKKDIGPQMIRKGLAVVYEGSDGV 190


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 324 INSYSK-KRIAFWTETNEKFVIVLTFL 247
           + SYSK KR++FW +      +V++F+
Sbjct: 183 VQSYSKSKRLSFWLQLGMIIAVVVSFI 209


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +1

Query: 325 NINQQFVDAPLTNGDMTPKVFTNSRETNKRSMVRSGEDAGRHRGRTKRSNNGGDGQTARL 504
           +IN     +PL N  ++P+    SR   +    RS   + R+  RT+  +N     +  L
Sbjct: 521 SINIDIPPSPLQNTVISPQPTRRSRTPIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSL 580

Query: 505 ARLVYGYPT 531
             ++   P+
Sbjct: 581 ISIISSKPS 589


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = +1

Query: 313 IRINNINQQFVDAPL------TNGDMTPKVFTNSRETNKRSMVRS 429
           IR NN+   F++APL          +TPK+ + +   NK + V S
Sbjct: 378 IRANNVRSSFLEAPLPVQPNVQAETVTPKISSKASPFNKPNSVHS 422


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -2

Query: 486 ISPVITSFCSPAMPTGVLTGSNHAPFVSFTR 394
           + P  T    P  PTG L      PF SF +
Sbjct: 212 VQPQQTGVVMPPQPTGYLQAQPTGPFASFVQ 242


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 348 IHKLLVNVINSYSKKRIAFWTETNEKFVIVLTFLK 244
           ++ LL  +I  + KK    WT ++E+ + +  FLK
Sbjct: 160 VNALLDAIITLFQKKLSRVWTTSSERDMFLSLFLK 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,639
Number of Sequences: 5004
Number of extensions: 70351
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)