Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0067
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 32 0.58
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 30 1.8
01_06_0434 - 29316477-29316872,29316970-29317212,29317312-293173... 30 1.8
04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584... 30 2.3
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 29 4.1
06_03_0380 + 20079366-20079605,20079943-20080341 29 5.4
04_04_0809 - 28236216-28236679,28236776-28236899,28237049-282371... 29 5.4
03_02_0487 + 8821543-8821866,8821958-8822335,8822928-8823020,882... 29 5.4
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 28 7.1
07_01_0622 - 4625246-4627759 28 9.4
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912 28 9.4
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 31.9 bits (69), Expect = 0.58
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 268 KFFICLCPKRNPLFRIRINN-INQQFVDAPLTNGDMTPKVFTNSRETNKRSMVRSGEDAG 444
K F+ LC K+NP R+ + + +FV N +PK+ RE K V+S DA
Sbjct: 268 KEFVSLCLKKNPAERLSAKDLLKHRFV----RNARKSPKLLDRIRERPK-FPVKSSADAT 322
Query: 445 RHRGRTKRSNNGGDGQTARLARLVYGYPTP 534
++ GRT + G G T ++ R +P
Sbjct: 323 QN-GRTHVEEDDGTG-TIKVERATRDVVSP 350
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 563 PLSPLYQKISGVGYPYTRRARRAVCPSPPLLLRFVLPRCRP 441
PLS + + Y + R RR+ P+PP L+ LP C P
Sbjct: 360 PLSSVSDGADAISYSHPRAKRRS--PTPPGLIPVGLPTCNP 398
>01_06_0434 -
29316477-29316872,29316970-29317212,29317312-29317387,
29317581-29317597
Length = 243
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 436 DAGRHRGRTKRSNNGGDGQTARLARLVYGYPTPEIFWYRGLNGPMVPYSSTL 591
D H ++ GGDG+T+R A + YP + G GP+ ST+
Sbjct: 88 DRNGHPVHGEKHGGGGDGRTSRTAEVKLDYPYEFLTGVGGRCGPVAHGGSTV 139
>04_01_0450 -
5840015-5840055,5840635-5840977,5841326-5841537,
5842381-5842477
Length = 230
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/24 (66%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 418 MVRSGE-DAGRHRGRTKRSNNGGD 486
M RSGE DAGR GR RS GGD
Sbjct: 1 MERSGEGDAGRGDGRRLRSGQGGD 24
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 430 GEDAGRHRGR-TKRSNNGGDGQTARLARLVYGYP-TPEIF-WYRGLNGPMVPYSSTLYEA 600
G D GR G T R G+T+R R P T E F W R ++ P+VP+ S E+
Sbjct: 349 GSDGGRKDGEATPRREIRVRGRTSRWDRRSEVSPRTQEGFVWRRNVSHPVVPHGSHSMES 408
Query: 601 RENVL 615
+ L
Sbjct: 409 EKTAL 413
>06_03_0380 + 20079366-20079605,20079943-20080341
Length = 212
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 358 TNGDMTPKVFTNSRETNKRSMVRSGEDAGRHRGRTKRSNNGGDGQ 492
T M P++FT + V GE G GR + + G DG+
Sbjct: 57 TGVSMGPEIFTEGEVLEEEEDVIEGESYGSKLGRVREVDVGDDGR 101
>04_04_0809 -
28236216-28236679,28236776-28236899,28237049-28237191,
28237697-28237832,28238413-28238888,28238940-28239024
Length = 475
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 376 PKVFTNSRETNKRSMVRSGEDAGRHRGRTKRSNNGGDGQTARLARLVYGYPTPEI 540
PK ++ + + R RSG H + R +G DG + GYP+P +
Sbjct: 427 PKAASSREDASPRVPTRSGGHGHHHHHHSSRPRSGSDGARS-------GYPSPRV 474
>03_02_0487 +
8821543-8821866,8821958-8822335,8822928-8823020,
8823613-8824236
Length = 472
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 355 LTNGDMTPKVFTNSRETNKRSMVRSGEDAGRHRGRTKRSNNGGD 486
+TN KV + E N G G HRG K S NGG+
Sbjct: 133 VTNMYAMGKVRMTAAELNSSDADGGGGGGGGHRGGKKSSKNGGE 176
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 373 TPKVFTNSRETNKRSMVRSGEDAGRHRGRTKR 468
TPK+ +E +KR++ + GEDA K+
Sbjct: 350 TPKISKKGKEKSKRALDKEGEDASVEEASNKK 381
>07_01_0622 - 4625246-4627759
Length = 837
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = -2
Query: 555 SSVPEDFRGRVSVHEARKTSGLPISPVITSFCSPAMPTGVLTGSNHAPFVSFTRVCEYFW 376
S V FRG V SG+ I+P + + + +++G ++P VS + Y
Sbjct: 692 SRVLTTFRGTVGYLAPEWLSGVAITPKVDVYSFGMVLLEIISGRRNSPKVSASN--SYHG 749
Query: 375 CHITIRQWSIHKLLVNVINSYSKKRI 298
+ +R +I+KL V ++S R+
Sbjct: 750 AYFPVR--AINKLHVGDVHSLMDPRL 773
>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
Length = 487
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 433 EDAGRHRGRTKRSNNGGDGQTARLARLVYGY 525
+DAG G ++ GG AR+ARLV Y
Sbjct: 224 KDAGAGGGGAAKAGGGGGAAAARVARLVDAY 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,373,454
Number of Sequences: 37544
Number of extensions: 471909
Number of successful extensions: 1618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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