Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0066
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 28 0.81
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 28 1.1
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 1.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 3.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 4.3
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces... 26 4.3
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.7
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 25 7.5
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 7.5
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 25 7.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.5
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 7.5
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 10.0
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 10.0
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 28.3 bits (60), Expect = 0.81
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 43 EQAENIIKEHEAFLTTMEANDDKINSVVQF--ANRLVEERHFDADKIQRKAENIEARRNA 216
+Q +++ + EA +T E ++I S + A +++EER+ + + K ++ + +
Sbjct: 265 QQNQDLYNQTEALKSTNEELINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMKS 324
Query: 217 NREKALNLMEKLQTS 261
E NLM++LQ +
Sbjct: 325 KMESRTNLMKQLQVN 339
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 52 ENIIKEHEAFLT-TMEANDDKINSVVQFANRLVEERHFDADKIQ 180
+N I +H+A+++ EAN+ ++S V +V+ F +K+Q
Sbjct: 153 KNEILKHQAYVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQ 196
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 246 EAPDQLQLHQFLQDCDELGEWVQEKNVTAQDDTYRSAKTI 365
EAPD L QD L ++E N+T D+ YR I
Sbjct: 218 EAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYREVLRI 257
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 61 IKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAENIE 201
+KE + ++E + S+++ L+E+ D KIQ + E++E
Sbjct: 312 VKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDLGKIQGEIESLE 358
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 372 KWTRHQAFEAEIA-ANKERLFAVQNAAEELMKQKPEFVEVISPKMHD 509
++ R+ A +AEI ANKER+ +L+ K + + S M+D
Sbjct: 848 EFLRNAASQAEIVGANKERIQKTVENGSQLLDSKSKAIHSNSRSMYD 894
>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Frame = +1
Query: 157 HFDADKIQRKAENIEARRNANREKALNLMEKLQTSFSCT-------SSCRTATNLENGFR 315
H+D+ K+ E + R+N + E E+ SFS T + R N NG
Sbjct: 65 HYDSGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEANFSNGLL 124
Query: 316 RRTLP 330
TLP
Sbjct: 125 TVTLP 129
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 76 AFLTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAENIEARRNANREKALNLMEKLQ 255
AF+ + D I+ ++F + + +ER + + EAR N +EK E+++
Sbjct: 136 AFVEFINPKTDVISKALKFHHTIYKERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMR 195
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +1
Query: 163 DADKIQRKAENI---EARRNANREKALNLMEKL 252
D D + ++ I + +N + KALNL+EKL
Sbjct: 201 DLDNLMKEMNQIRDADLEKNEKKAKALNLLEKL 233
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 46 QAENIIKEHEAFLTTMEANDDKI 114
Q +N+ KEH + L T++ DK+
Sbjct: 500 QLQNLEKEHASTLVTLKQKSDKV 522
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 402 EIAANKERLFAVQNAAEELMKQKPEFVEVISP 497
EIA NK+ + ++Q A+E ++ E +E+ P
Sbjct: 116 EIATNKKLVRSIQQDAQEFLQHLVETLELQKP 147
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 7.5
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +3
Query: 246 EAPDQLQ--LHQFLQDCDELGEWVQEKNVTAQDDTYRSAKTIHSKWTRH-QAFEAEIAAN 416
E DQLQ + + Q+ + E V K+ DD + ++ R + FE I N
Sbjct: 532 EDVDQLQEYVEEITQELQDTKE-VLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIREN 590
Query: 417 KERLFAVQNAAEELMKQKPEFVEVISPKMHD 509
+E + + E+L + + E + K H+
Sbjct: 591 EESISLFKEEVEKLTDEITQLSERYNDKCHE 621
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 7.5
Identities = 20/93 (21%), Positives = 37/93 (39%)
Frame = +3
Query: 255 DQLQLHQFLQDCDELGEWVQEKNVTAQDDTYRSAKTIHSKWTRHQAFEAEIAANKERLFA 434
+Q+Q L D + V+ +V + D +RS T ++ R A + A + +
Sbjct: 1534 EQIQYAPLLDDKVLVKAIVELASVASSSDNFRSMNTQLLQYLRSSNINARLLAIQIQTQL 1593
Query: 435 VQNAAEELMKQKPEFVEVISPKMHDSKINLKLA 533
E + P+ V I+ M D ++ A
Sbjct: 1594 YGRLGENWISTLPQSVPFIAELMEDDDDQVETA 1626
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 163 DADKIQRKAENIEARRNANREKALNLMEKLQTSFS 267
D+D+ R + IE +RNA +++ +L++ TS S
Sbjct: 138 DSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHS 172
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 268 CTSSCRTATNLENGFRRRTLPHKTIPTAPPRL 363
C S+ +A L NGF ++ + T PP L
Sbjct: 313 CPSTPSSAVTLSNGFDSQSNAYNNSGTGPPML 344
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 261 LQLHQFLQDCDELGEWVQEKNVTAQDDTYRSAKTIHSKWTRHQAFEAEIAANKE 422
L QF+Q D L +W + KN+ Y S+ R A ++ A N E
Sbjct: 891 LLFSQFIQQLDILEDWFEYKNI-----AYARFDGASSEMERQSAIDSFNAPNSE 939
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,199
Number of Sequences: 5004
Number of extensions: 42198
Number of successful extensions: 180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -