Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0066
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 32 0.36
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 31 0.47
01_06_0259 + 27955005-27955436,27955685-27955822 31 0.62
11_06_0511 - 24434007-24436814 31 0.82
11_06_0323 + 22368959-22369093,22369833-22370000 30 1.1
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 30 1.4
08_01_1025 + 10361064-10361237,10361807-10361877,10362001-103622... 29 1.9
04_03_0997 - 21548158-21548377,21548482-21548523,21548646-215487... 28 4.4
10_05_0047 + 8524345-8524414,8524687-8524776,8525004-8525306,852... 28 5.8
02_05_0980 - 33271879-33271934,33272031-33272100,33272194-332723... 28 5.8
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 28 5.8
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 27 7.7
02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762 27 7.7
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 27 7.7
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.9 bits (69), Expect = 0.36
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = +1
Query: 16 AKTEPPTNLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAEN 195
AK + ++Q + E EA TTME+ ++++N V+ N+ + A+K ++ N
Sbjct: 742 AKNDVKKLIKQFRDNQLEAEAGRTTMESFENRVNEVL---NKARDVAGSSAEKSLSESNN 798
Query: 196 IEARRNANREKALNLMEKLQTSFSCTSSCRT-ATNLENGFRRRTLPHKT 339
++A A + + ++ +C + GF RTLPH T
Sbjct: 799 LKAMATAGSKGTFINISQMT---ACVGQQNVEGKRIPFGFTNRTLPHFT 844
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 303 EWVQEKNVTAQDDTYRSAKTIHSKWTRHQAFEAEIAANKERLFAVQNAAEELMKQK 470
EW +E A+ +T + I +W R+ A A + N + + N A++++ QK
Sbjct: 188 EWDKEDEAVAESNTQQVLADIPVQWARNWA-RARVKKNSDETLSFPNPADQVVYQK 242
>01_06_0259 + 27955005-27955436,27955685-27955822
Length = 189
Score = 31.1 bits (67), Expect = 0.62
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 251 SRPASVAPVLAGLRRTWRMGSGEERYRTRRYLPLRQD 361
SRP PV++ +RTW+ SGE + Y R D
Sbjct: 91 SRPCRTQPVISYTQRTWKAASGEPMHAESGYWRPRPD 127
>11_06_0511 - 24434007-24436814
Length = 935
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 82 LTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAENI----EARRNANREKALNLMEK 249
L T++ +IN + + +L+ RH AD + + +I +A + N K L +E
Sbjct: 669 LQTLDLRGSRINELPSWIGKLIRLRHLSADTLDGQGPDIYRAVKAPKTVNYLKELRTLET 728
Query: 250 LQTS 261
+Q S
Sbjct: 729 VQAS 732
>11_06_0323 + 22368959-22369093,22369833-22370000
Length = 100
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 10 RLAKTEPPTNLEQAENIIKEHEAFLTTM--EANDDKINS-VVQFANRLVEERHFDADKI- 177
RLA PPT+ + AE +I + +A L T EAN ++ V+Q A R + H +AD +
Sbjct: 12 RLAAAPPPTDEQMAE-LISKLQAVLPTRGGEANAKASSAEVLQEACRYIRRLHREADALS 70
Query: 178 QRKAE 192
+R AE
Sbjct: 71 ERLAE 75
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +3
Query: 156 ALRRGQDSAQGGEHRGTPQCQPRKG---T*PHGEAPDQLQLHQ 275
+L R D QGG+ RGTPQ G P G Q+Q H+
Sbjct: 7 SLNRSIDHKQGGQQRGTPQQHLHAGHAQEQPPGHGHGQVQRHE 49
>08_01_1025 +
10361064-10361237,10361807-10361877,10362001-10362235,
10362317-10362520
Length = 227
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 PASVAPVLAGLRRTWRMGSGEERYRTR-RYLPLRQDY 364
P+ + P G R +G GEE YR R +Y L QDY
Sbjct: 17 PSPLLPRAPGHSRGGGVGGGEEAYRARAKYKNLLQDY 53
>04_03_0997 -
21548158-21548377,21548482-21548523,21548646-21548722,
21548798-21548914,21549149-21549252,21549330-21549399,
21549489-21549598,21549845-21549932,21550006-21550096,
21550176-21550268,21550362-21550687,21550922-21551290,
21551934-21552020
Length = 597
Score = 28.3 bits (60), Expect = 4.4
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Frame = +1
Query: 43 EQAENIIKEHEAFLTTMEANDD----KINS--VVQFANRLVEERHFDADKIQRKAENIEA 204
E +N+I + L + AND KI S +V+F NR + + + D+ K E+
Sbjct: 239 EGVQNLISSDMSVLMRIVANDKREELKIFSQEIVRFGNRCKDPQWHNLDRYFVKLESENP 298
Query: 205 RRNANREKALNLMEKLQTSFSCTSSCRTATNLENGFRRRTLPHKTIPTAPPRLSTLSGPV 384
+ +E A+ M+KL T+ + + F + T+ + L G
Sbjct: 299 PQKQLKETAVAEMQKLMDLVHRTTDLYHELHALDRFEQDYRCKLTVKGNSYQKDNLPGEN 358
Query: 385 IRLSKLKLRPTKN 423
I + +++L+ +N
Sbjct: 359 IEVVRIELKSQRN 371
>10_05_0047 +
8524345-8524414,8524687-8524776,8525004-8525306,
8525413-8525872,8525962-8526043,8526157-8526351
Length = 399
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 1 QEHRLAKTEPPTNLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDAD-KI 177
+ + AK + L++ +N ++ E L +IN V + EE+ A+ K+
Sbjct: 320 EAEKKAKAKRQMELKEGDNSERKREKALEEYNDEITRINKVAAASRLTAEEKRRSAERKV 379
Query: 178 QRKAENI 198
+ KAE I
Sbjct: 380 REKAERI 386
>02_05_0980 -
33271879-33271934,33272031-33272100,33272194-33272355,
33272787-33272895,33273350-33273608,33274193-33274272,
33274370-33274499,33274676-33274793,33275222-33275302,
33275510-33275827,33277490-33277741
Length = 544
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 343 PTAPPRLSTLSGPVIRLSKLKLRPTKNDCSLCR 441
PT P R +T++GP L + +PT+ S C+
Sbjct: 52 PTQPSRTTTIAGPPRYLFNAQAQPTRPRSSSCQ 84
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 518 DLGVVHLGRNYFNEFRFLLHELFSGV-LHSEQSFFVGRNFSFESLMTGPLRVDSLGGAVG 342
D G H+ R + +F L G+ H + V + +FE + L LGGA G
Sbjct: 258 DRGEAHVNRGFRVQFSQALGPCRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAG 317
>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 169 DKIQRKAENIEARRNANREKALNL 240
DK+Q K N+E + R+KALN+
Sbjct: 967 DKLQEKLTNLENENHVLRQKALNM 990
>02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762
Length = 495
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 262 FSCTSSCRTATNLENGFRRRTLPHKTIPTAPPRLSTLSGPVIRLSKLKLR 411
F T+ C L +G LP +P+A PRLS L+ V+ L + L+
Sbjct: 272 FGSTADCVEHLYLCSGGPETGLPRTNLPSAVPRLSNLT--VLTLCSIALQ 319
>01_06_0595 - 30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +1
Query: 37 NLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAENIEARRNA 216
N + +N+ +E +AN + + + N +V+ + A I KAE R
Sbjct: 947 NQRRKDNVWEEESLASPNSKANQGRNGNKQRRQNSIVKGKVSLAHVIG-KAEACSQRGGW 1005
Query: 217 NREKALNLMEKLQ 255
+R+KAL++ EKL+
Sbjct: 1006 SRQKALSIAEKLE 1018
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,796
Number of Sequences: 37544
Number of extensions: 328579
Number of successful extensions: 1266
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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