Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0066
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.39 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   1.6  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 298  LENGFRRRTLPHKTIPTAPPRLS--TLSGPVIRLSKLKLRPTKND 426
            +EN F   T+ H+ I  APP     TL+        +K+RP   D
Sbjct: 1348 VENTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMKVRPHPTD 1392


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 307 GFRRRTLPH 333
           GFR+RTLPH
Sbjct: 262 GFRKRTLPH 270


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 244 EKLQTSFSCTSSCRTATNLENGFRRRTLPHKTIPTA 351
           EKL+  F+C        + +NG  R  L  K IP A
Sbjct: 66  EKLKCYFNCVLEKFNVMDKKNGKIRYNLLKKVIPEA 101


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 308 GSGEERYRTRRYLPLRQDYPL*VDPSSGFRS 400
           G+G+E Y+T    P R  +      S+GF S
Sbjct: 402 GAGKENYQTMSRDPARTPFQWDDSVSAGFSS 432


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 308 GSGEERYRTRRYLPLRQDYPL*VDPSSGFRS 400
           G+G+E Y+T    P R  +      S+GF S
Sbjct: 402 GAGKENYQTMSRDPARTPFQWDDSVSAGFSS 432


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/35 (17%), Positives = 21/35 (60%)
 Frame = -1

Query: 107 SSLASIVVRKASCSLIIFSACSKFVGGSVLASLCS 3
           + + S +++K + +++    C K+ G  ++ ++C+
Sbjct: 303 NGMLSHILQKTTLNMLTQVECYKYYGNIMVNAMCA 337


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 13 LAKTEPPTNLEQAENIIKEHEAF 81
          + +   P NLE++ N+I E + F
Sbjct: 19 IVRENSPRNLEKSLNVIHEWKYF 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,310
Number of Sequences: 438
Number of extensions: 3039
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)