Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0065
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    31   0.24 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   5.1  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.9  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.9  

>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 659 CSENGQDPCLLVRFSAIKVVCVCGST 736
           C  NGQD  LL  +++I  +C+C ST
Sbjct: 96  CGGNGQDEHLLSTYASILSICLCDST 121


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 289 FSLIFQILKAVRSLLIMNFCTESLKAVAGTAMFTYG*YAFSSFLALLTIMPTTSMPLVRR 110
           F L+  +L  V      NF   S+  +  T  F  G   F S++AL    P+TS P + R
Sbjct: 21  FHLVLFVLSYVLGWPFTNFGFFSVYGLRHT--FRNGDSVFISYVALRLHRPSTSKPYLLR 78

Query: 109 II 104
           I+
Sbjct: 79  IV 80


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 349 HCLSLYFGPVRQQSPLRLNDFSL-IFQILKAVRSLLIMNF 233
           +C  L+     +QS LR+   SL IF +LK V SLLI+ F
Sbjct: 80  YCFVLFL-QFAEQSTLRVPMASLLIFWLLKVVTSLLILLF 118


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 627 KSGIFCEKDFFFPG 586
           K+G FC  D FFPG
Sbjct: 406 KTGFFCTADRFFPG 419


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = +2

Query: 83  TPTSRWSNNSSDQWHRSGRHNCEQCQE*RERVLPVREHGGAGHGLQGLRAEVHDQQGSNS 262
           +P  RW  N + Q H S     E C++ R R           HG QG R+  HD Q  NS
Sbjct: 26  SPPRRW-RNCTLQRHGSRASADEFCEQYRSR----------SHGPQGRRSLEHDNQFFNS 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,990
Number of Sequences: 5004
Number of extensions: 62873
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)