Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0065
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb (recombi...    29   3.6  

>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 559 NYCTSFIIQSLK*PILSFIGRCAIF-NVGYCTSELLRFLDSKSRKLLCSI 413
           N C +F + SL   I+SF+    IF  VG+  +E + +L S    LLC+I
Sbjct: 332 NECRAFTLSSLM-GIISFLPASNIFFTVGFSIAERVLYLPSAGFCLLCAI 380


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 108 IRLTSGIEVVGIIVSNAKNDENAYYPYVNMAVPATAFKDSVQKFMISKDRTAFKIWK 278
           I  TS I  +  I  N    +N Y+ Y    +      + V+ + +  D T F IW+
Sbjct: 524 INFTSTITPINYIHMNPAEIKNGYFAYHCATLAKELGLNDVEGYFLMSDDTVFNIWQ 580


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 108 IRLTSGIEVVGIIVSNAKNDENAYYPYVNMAVPATAFKDSVQKFMISKDRTAFKIWK 278
           I  TS I  +  I  N    +N Y+ Y    +      + V+ + +  D T F IW+
Sbjct: 541 INFTSTITPINYIHMNPAEIKNGYFAYHCATLAKELGLNDVEGYFLMSDDTVFNIWQ 597


>AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb
           (recombination protein) homologprotein 2 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 240 MISKDRTAFKIWKIKEKSFNRNGDCCRTGPKYKLKQC 350
           +I  D+ + ++ ++  +SFNR+ D    GPK KL QC
Sbjct: 188 VIQVDKASGRVTRLG-RSFNRSHDYDAMGPKVKLVQC 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,979,806
Number of Sequences: 27780
Number of extensions: 348290
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)