Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0065
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.77 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.77 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 206  GHGLQGLRAEVHDQQGSNSLQNLENQR 286
            GHGLQG    +     SN  Q ++ Q+
Sbjct: 1039 GHGLQGQTIFIKQSPSSNQSQQIQQQQ 1065



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 87   QQVGGPIIRLTSGIEVVGIIVSNA 158
            Q  G PI+ L SG + VG+ VSN+
Sbjct: 1199 QLAGKPIV-LASGNKNVGVGVSNS 1221


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +3

Query: 216 FKDSVQKFMISKDRTAFKIWKIKEKSFNRNGDCCRTGPKYKLKQCLYPIS 365
           + +++++F  SK   A      +E   + N +  +T P   +++C+ PI+
Sbjct: 547 YNENIERFFKSKPPVATMYGSDEEIINSSNDEGGKTSPNSAVRKCMSPIN 596


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -1

Query: 582 SKLQYPTLTIAHRLLYKA*NNRSSLS*DGVQYLTSGTVPPSY 457
           S LQ P+L   H  L  A   RS+    GV   T+G +PPSY
Sbjct: 277 SSLQ-PSLASHHSHLSSA-LGRSACHSPGVYPSTAGFLPPSY 316


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 609 HKIYRFCILNIPFIRISVVKMGKTRVYWSVFRL*KSCVCVAQLILV 746
           ++IY  C    P+I I+ V + + R  +  F L   CV +A + ++
Sbjct: 207 NEIYYNCCPE-PYIDITFVVIIRRRTLYYFFNLIVPCVLIASMAVL 251


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 125 HRSGRHNCEQC 157
           H +G H+CE C
Sbjct: 272 HEAGSHSCEAC 282


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 301 RLNDFSLIFQILKAVRSLLIM 239
           +  DFS  FQIL A R+L I+
Sbjct: 188 QFQDFSESFQILHAGRALRIL 208


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 301 RLNDFSLIFQILKAVRSLLIM 239
           +  DFS  FQIL A R+L I+
Sbjct: 188 QFQDFSESFQILHAGRALRIL 208


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 301 RLNDFSLIFQILKAVRSLLIM 239
           +  DFS  FQIL A R+L I+
Sbjct: 188 QFQDFSESFQILHAGRALRIL 208


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 261 AFKIWKIKEKSFNRNGDCCRTGPK 332
           A K   IKEK   RNG      PK
Sbjct: 369 ACKFADIKEKCDRRNGKTTEENPK 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,966
Number of Sequences: 438
Number of extensions: 5068
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)