Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0064
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    91   9e-21
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    28   0.098
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   6.4  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   6.4  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 91.1 bits (216), Expect = 9e-21
 Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 5/148 (3%)
 Frame = +2

Query: 335 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPT 511
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+    T
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQT 204

Query: 512 GSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELAQQIQQVAADFGHTSYV 679
           GSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA QI      F + S V
Sbjct: 205 GSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTV 264

Query: 680 RNTCVFGGAPKREQARDLERGVEIVIAT 763
           +   ++GG     Q   +  G  I++AT
Sbjct: 265 KVAVIYGGTSTNHQRGRILGGCHILVAT 292


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 0.098
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 427 NGLQRTDAHSSSRLADSYVWKEFSWRTNGFRQNVGLHLASHCAHKQPTAYSE 582
           + L  T + S+S LA  + +  F+W  NG   N   H   +  +  PT Y +
Sbjct: 262 SSLITTPSPSASPLAYQHEYNSFNWTANGHGHNTSSH-NYYAQNYAPTYYGQ 312


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/53 (18%), Positives = 24/53 (45%)
 Frame = -3

Query: 185 TKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDV 27
           T+  R+ +++++  ++   I        + TT++ A       DYF   ++ V
Sbjct: 93  TQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPV 145


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/53 (18%), Positives = 24/53 (45%)
 Frame = -3

Query: 185 TKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDV 27
           T+  R+ +++++  ++   I        + TT++ A       DYF   ++ V
Sbjct: 93  TQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPV 145


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory
          receptor candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 80 AIIPVTRHDYFSDLVEDVYL 21
          A++PV +H     LV  VYL
Sbjct: 18 ALLPVKKHHRLEKLVPCVYL 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,263
Number of Sequences: 336
Number of extensions: 4324
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)