Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0064
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 214 1e-56
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 138 1e-33
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 114 1e-26
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 93 4e-20
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 89 9e-19
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 80 4e-16
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 79 5e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 78 1e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 77 3e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 70 3e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 70 4e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 68 1e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 68 1e-12
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 64 3e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 63 4e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 62 9e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 9e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 62 1e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 58 2e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 56 4e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 55 1e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 42 8e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 36 0.005
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 36 0.005
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.009
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.14
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 29 0.57
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.76
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 3.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 4.0
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 7.1
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 7.1
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 7.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 214 bits (523), Expect = 1e-56
Identities = 103/171 (60%), Positives = 123/171 (71%), Gaps = 1/171 (0%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
F K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + VK +G
Sbjct: 82 FQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLG 141
Query: 434 YKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 610
++ PTPIQ Q WP+AMSG+++VG+ TGSGKTL+Y LPAIVHIN QP + GDGPI LVL
Sbjct: 142 FEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVL 201
Query: 611 APTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
APTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVEI IAT
Sbjct: 202 APTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIAT 252
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 138 bits (333), Expect = 1e-33
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 430
F K+FY + SP EV+E R + + + + G++ P+ + + + ++
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 431 GYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 607
GY++PT IQAQ P SG++++GV TGSGKT+A++LP HI +Q P++ G+GPIA++
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAII 496
Query: 608 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
+ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ T
Sbjct: 497 MTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCT 548
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 114 bits (275), Expect = 1e-26
Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 4/151 (2%)
Frame = +2
Query: 323 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 502
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 503 VP-TGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 670
+ TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 671 SYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
R V GG EQ+ + +G IV+AT
Sbjct: 352 LGFRCVSVVGGHAFEEQSFQMSQGAHIVVAT 382
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 93.1 bits (221), Expect = 4e-20
Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Frame = +2
Query: 368 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV-PTGSGKTLAYILP 544
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+ TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 545 AIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 724
A+ ++N + P LV++PTRELA Q + + ++ V+GGAPK EQA
Sbjct: 223 ALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA 280
Query: 725 RDLERGVEIVIAT 763
R + ++I T
Sbjct: 281 R-AAKNASVIIGT 292
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 88.6 bits (210), Expect = 9e-19
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 14/156 (8%)
Frame = +2
Query: 338 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTG 514
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ TG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 515 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 655
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 656 DFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
F + S+VR V+GGA R Q R +++G +++ AT
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSAT 312
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 79.8 bits (188), Expect = 4e-16
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Frame = +2
Query: 308 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 487
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 488 KNLVGVP-TGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 658
++++G TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKE 183
Query: 659 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
+ V GGA +R +A L +GV +++AT
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVAT 218
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 79.4 bits (187), Expect = 5e-16
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVH 556
F+ + + + G+K PTPIQ + P+ + G+++VG+ TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
+ + AL+L+P RELA Q +V DF + +R+ + GG EQ L
Sbjct: 131 LKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187
Query: 737 RGVEIVIAT 763
+IV+AT
Sbjct: 188 GKPDIVVAT 196
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 78.2 bits (184), Expect = 1e-15
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVH 556
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+ TGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 557 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 733
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA L
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 734 ERGVEIVIAT 763
+ +++ T
Sbjct: 162 SKKPHVLVCT 171
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 77.0 bits (181), Expect = 3e-15
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVH 556
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
+ +P ++ L+L PTRELA Q VA + + GG + Q ++L
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 737 RGVEIVIAT 763
+ +IVIAT
Sbjct: 379 KRPDIVIAT 387
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 70.1 bits (164), Expect = 3e-13
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL-VGVPTGSGKTLAYILPAIVH 556
F+ N +++ V G+K+ TP+QA P+ + K+L V TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 658
+ + G G AL++APTRELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 69.7 bits (163), Expect = 4e-13
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +2
Query: 350 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKT 526
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 527 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 649
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 68.1 bits (159), Expect = 1e-12
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + G+ G++ P+PIQ + PIA+SG++++ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
++ + + L+L PTRELA Q QV G V+ GG R+ L
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 737 RGVEIVIAT 763
V IV+ T
Sbjct: 161 DTVHIVVGT 169
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 68.1 bits (159), Expect = 1e-12
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
F + ++ +K + EPT IQ + G+N +G TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
+ P G AL+L PTRELA QI + A G +++ + GG Q+ DL
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 737 RGVEIVIAT 763
+ +V+AT
Sbjct: 124 KRPHVVVAT 132
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 63.7 bits (148), Expect = 3e-11
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Frame = +2
Query: 371 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKNLVGVPTGSGKTLAYILPA 547
I F++ N + +G+ G++ P+ IQ + PI L +G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 548 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 727
+ I+ +++ AL+LAPTRELAQQIQ+V G V GG R+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMA 132
Query: 728 DLERGVEIVIAT 763
L+ GV +V+ T
Sbjct: 133 ALQAGVHVVVGT 144
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 63.3 bits (147), Expect = 4e-11
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Frame = +2
Query: 428 MGYKEPTPIQAQGWPIAMSGKN---LVGVPTGSGKTLAYILPAIVHINNQPPI--RRGDG 592
M PT IQ+ P ++ + + TGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 593 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
A+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 62.1 bits (144), Expect = 9e-11
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Frame = +2
Query: 431 GYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 601
G+ +P PIQ+ P A G +++G TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 602 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
LV+APTRELA QI Q + +R + GG ++Q R L + +V+AT
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVAT 249
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 62.1 bits (144), Expect = 9e-11
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Frame = +2
Query: 314 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 493
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 494 LVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 670
++G TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 671 SYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
+ GG +E+ L R + I++ T
Sbjct: 138 HSFSAGLIIGGNNYKEEKERLSR-MNILVCT 167
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 61.7 bits (143), Expect = 1e-10
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 1/151 (0%)
Frame = +2
Query: 314 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 493
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 494 LVG-VPTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 670
++ +G+GKT + + + I+ +R AL+L+PTRELA QIQ V G
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 671 SYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
V+ GG + L+ G +V T
Sbjct: 116 MNVQCHACIGGTSVGNDIKKLDYGQHVVSGT 146
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 57.6 bits (133), Expect = 2e-09
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Frame = +2
Query: 371 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVP-TGSGKTLAYIL 541
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 542 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 682
+ ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 56.4 bits (130), Expect = 4e-09
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Frame = +2
Query: 347 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN--LVGVPTGSG 520
S ++ P + E A+ + + G+++ TP+Q + + +V TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 521 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 700
KTLA++L A + P +++L+PTRELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
Query: 701 GAPKREQARDLERG-VEIVIAT 763
G K + + RG ++IAT
Sbjct: 149 GNSKMREENAIRRGNANLLIAT 170
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 55.2 bits (127), Expect = 1e-08
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Frame = +2
Query: 275 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 451
P P++ ++ +++ + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 452 IQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 628
IQ P S ++L+ PTGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
Query: 629 AQQIQQVA 652
+QI + A
Sbjct: 128 CEQIYRQA 135
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 42.3 bits (95), Expect = 8e-05
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Frame = +2
Query: 413 QGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVHINNQPPIRRGD 589
+ + G++ P+ +Q P ++ G + L +G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 590 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGG---APKREQARDLERGVEIV 754
G ++ LVL TRELA QI+ A F + VR +GG E +D + IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 755 IAT 763
+AT
Sbjct: 178 VAT 180
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 491 NLVGV-PTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 640
NL+ V PTG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 491 NLVGV-PTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 640
NL+ V PTG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 485 GKNLVGVPTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 640
G V TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 174 GDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 479 MSGKNL-VGVPTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 634
+SGK++ + +PTG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 29.5 bits (63), Expect = 0.57
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 338 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPTGS 517
V V VE PI Y GV +GY + P G P+ ++GK VPT
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKR---VPT-V 308
Query: 518 GKTLAYILPAIVHINNQPPIRRGD 589
GK +L + + + P ++RGD
Sbjct: 309 GKVCMDML--AIDVTDVPDVKRGD 330
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.1 bits (62), Expect = 0.76
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 497 VGVPTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 667
VG PTGSGKT+A L ++N P + + +AP + L +++ D+GH
Sbjct: 1155 VGAPTGSGKTMAAELATWRALHNYPKSK------VVYIAPMKAL---VKERVKDWGH 1202
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 428 MGYKEPTPIQAQGWPIAM-SGKN-LVGVPTGSGKTLAYILPAIVHINN 565
+ Y+ IQ+ +PIA + +N L+ PTG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 593 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -3
Query: 221 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 75
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 74 IPVT 63
PV+
Sbjct: 198 APVS 201
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = +1
Query: 511 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 663
GF + G + HC H++ AY E F Y R++T + C R W
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 236 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 93
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -2
Query: 168 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 10
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 419 VKTMGYKEPTPIQAQGW-PIAMSGKNLVGVPTGSGKTLAYILPAIVHI 559
++ GY +P P+QA G+ P+ + L TG + ++P + +
Sbjct: 1057 IQPTGYMQPIPVQATGYQPLMVQPTGLQPHMTGVMPQVTGVMPQMTGV 1104
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 431 PLSLHLVAHNQENL--LLQSIE 372
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,646
Number of Sequences: 5004
Number of extensions: 70431
Number of successful extensions: 249
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -