Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0063
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    30   0.33 
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    30   0.43 
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   3.0  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 459 IFITRCYSFVVNVHFTYIASSVHRARVEDMALVD-YGLEELMRAAGLGRQ 313
           +FIT   + V  V    IA S+HR   E   L + + + EL R  G  RQ
Sbjct: 370 LFITSIMNLVEKVLMQLIAMSLHRREYESRILYNKFAINELARLYGYARQ 419


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -2

Query: 751 VVGPLVSLHG*VPSPFCREAVMRFGLKGGAAVVTILETLELISQGG 614
           V+   + L+   PS F  E V+   L GG AVV +  TLE I Q G
Sbjct: 78  VIDKALMLYFKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 6   THKCIGLSRRENEIEHIIWKHKVHVIDPGI 95
           TH  IG  +R+ E   ++WKH V V D G+
Sbjct: 815 THDRIGDPQRDPETGEVVWKHGV-VEDDGL 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,769
Number of Sequences: 5004
Number of extensions: 76119
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)