Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0063
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1522 - 37962431-37963060,37963216-37963542                       29   4.2  
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    29   5.5  
06_03_1398 - 29867458-29867582,29868460-29868577,29868665-298687...    29   5.5  
01_06_1749 - 39636951-39638102                                         29   5.5  
09_02_0529 + 10276063-10277439                                         28   9.7  
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445...    28   9.7  
01_03_0114 - 12649104-12649141,12650137-12650245,12650500-126506...    28   9.7  

>01_06_1522 - 37962431-37963060,37963216-37963542
          Length = 318

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 530 TYMGG*AHSPPGGKWLLEPMD 592
           T + G  H PPGG+WL E MD
Sbjct: 42  TLLVGQLHLPPGGRWLDEYMD 62


>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 306 CGSDVPVQQLSSAPQVHSRPVPCPQHGHGV 395
           C S +PV     AP   SRPV  P+   GV
Sbjct: 61  CSSTLPVNPAEEAPTPSSRPVSSPRSFEGV 90


>06_03_1398 -
           29867458-29867582,29868460-29868577,29868665-29868757,
           29868980-29869117,29869193-29869320,29869417-29869577,
           29869683-29869773,29869858-29869914,29870654-29870777
          Length = 344

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 528 WTGVRTQRLPTTSNYANYNFAGMIFITRCYSFVVNVHFTYIASSVHRARVEDMALV 361
           W G+ T  L   +N+  Y FA  + +T   +  + V  +++A  V + R+E + ++
Sbjct: 55  WAGMMTMLLGEIANFVAYTFAPAVLVTPLGALSIIVS-SFLAHFVLKERLEKLGVL 109


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 642 SSIVTTAAPPFKPKRITA 695
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>09_02_0529 + 10276063-10277439
          Length = 458

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 511 SPHARPHLYGWMS 549
           +PH+R HLYGW S
Sbjct: 88  NPHSRTHLYGWES 100


>02_05_1312 +
           35642687-35642923,35643712-35643831,35644468-35644534,
           35644673-35644694,35645053-35645152,35645282-35645414,
           35645483-35645517,35645708-35646409,35646789-35647121,
           35647337-35647601,35647665-35647999,35648105-35648177,
           35648271-35648356,35648479-35648598,35648674-35648741,
           35648825-35648882
          Length = 917

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 282 IIAFKPQICGSDVPVQQLSSAPQVHSRPVPCPQHGH 389
           I A  P   G D   + LS    VHS    CP H H
Sbjct: 675 INASPPDDAGGDARDEALSYESVVHSDVAQCPNHNH 710


>01_03_0114 -
           12649104-12649141,12650137-12650245,12650500-12650691,
           12650797-12650904,12650986-12651162,12652331-12652459,
           12653314-12653589,12653667-12653916,12654909-12655561
          Length = 643

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 574 PLT-TRWAVSSSTHISVDGRADSKTSYHQQL 485
           P T T WA +   H++V+GR D+  +Y ++L
Sbjct: 273 PFTATLWAGAEGFHMTVNGRHDTSFAYRERL 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,655,678
Number of Sequences: 37544
Number of extensions: 507877
Number of successful extensions: 1145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)