Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0063
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    28   6.1  
At1g66145.1 68414.m07507 CLE18, putative CLAVATA3/ESR-Related 18...    28   8.1  

>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 516 RTQRLPTTSNYANYNFAGMIFITRCYSFV--VNVHFTYI 406
           R  +LP   N     FA  +F+  CY FV   N +F Y+
Sbjct: 475 RIFKLPDRLNTLELGFAAFLFVCGCYDFVHGKNNYFIYL 513


>At1g66145.1 68414.m07507 CLE18, putative CLAVATA3/ESR-Related 18
           (CLE18)
          Length = 101

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 264 IKSYIIIIAFKPQICGSDVPVQQLSSAPQ-VHSRPVPCPQHGHGV 395
           I S I+ I   P + G D   +Q+ + P  +H+ P P P+H H +
Sbjct: 19  ITSSIVAIREDPSLIGVD---RQIPTGPDPLHNPPQPSPKHHHWI 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,006,535
Number of Sequences: 28952
Number of extensions: 403054
Number of successful extensions: 824
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)