Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0061
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   1.6  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    26   3.7  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   6.5  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   8.6  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 414 DTDGSHLRPLDYSIGEKINPSSKLREKWW 500
           DTD + + P+ +S+     P+ +   KWW
Sbjct: 671 DTDEAKVEPIAHSVDYTFKPTVEWWNKWW 699


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 118 GSVSWRAAGAD--GERGHREYERYHPMPHNWFYKK 20
           GS +W  A A   GE      + +HP  H W Y++
Sbjct: 31  GSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEE 65


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 487 RSLLEGFIFSPIE*SRGLKWLPSVSATTISMPSLELH 377
           +SL EG  F+P E ++ LKW PS+    +   +   H
Sbjct: 224 KSLPEGETFTPQEAAKILKW-PSIEELNMRQNATHFH 259


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 250 DNPESCSIRRKSGAVPAAPHRPLSK*RRAEDTRCRSSSATQTD 378
           +NP+  ++ RKS + P +P R  +K   +     + SS T+ D
Sbjct: 48  NNPKQSTVSRKSFSAPTSPTR--NKRSGSSSQEYKKSSGTRGD 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,985
Number of Sequences: 5004
Number of extensions: 30822
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)