Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0061
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0509 + 10051965-10052079,10052467-10052672 29 2.8
09_02_0389 - 8456957-8459917,8461941-8462267 28 3.7
12_02_0634 + 21416205-21416954 28 5.0
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 28 5.0
09_06_0322 - 22329897-22330078,22330569-22331928 27 6.5
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 27 6.5
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 27 6.5
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 27 6.5
12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425... 27 8.7
03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321 27 8.7
>09_02_0509 + 10051965-10052079,10052467-10052672
Length = 106
Score = 28.7 bits (61), Expect = 2.8
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +3
Query: 288 SGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGIEIVVADTDGSHLRPLDYSIGEKI 467
+ AGS+ AA V M+ N+ S G E VVA+ D R D +
Sbjct: 7 AAAGSSCLAAVIVVAAAMSLMRPRSSNASSASGVRGQEDVVAECDMGTSR-ADATAAAPP 65
Query: 468 NPSSKLREKWWAL 506
SSK R +WWA+
Sbjct: 66 PVSSK-RLRWWAV 77
>09_02_0389 - 8456957-8459917,8461941-8462267
Length = 1095
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -2
Query: 493 FSRSLLEGFIFSPIE*SRGLKWLPSVSATTISMPSLELHPSELQSSTCIWYLP 335
F RS F++ RGL WL ++ + I++ SL+L + TCI Y+P
Sbjct: 523 FFRSFRTAFVYKNPSGDRGLNWLINL-RSLINLRSLDL------TGTCIRYIP 568
>12_02_0634 + 21416205-21416954
Length = 249
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -2
Query: 151 RRSRTCARPSRGSVSWRAAGADGERGHR 68
RR RT R G WR AG GERG R
Sbjct: 219 RRGRTTLRRG-GRGGWRPAGNVGERGRR 245
>08_02_1458 -
27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 127 PSRGSVSWRAAGADGERGHREYERYHPM 44
P S+SWRA G DG +G +++ M
Sbjct: 78 PPSASLSWRAMGVDGPQGSASGQKHLQM 105
>09_06_0322 - 22329897-22330078,22330569-22331928
Length = 513
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +3
Query: 261 VLLDKKEVWSGAG--SATSAAFKVKKGGRYQMQVELCNS 371
VLLDK ++GA +AT+A K ++G +++QV LC +
Sbjct: 31 VLLDKLAYFAGADVRNATTATSKTREG--HEIQVTLCTA 67
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 273 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGIEIVV 410
++E+WSGA SA K KK + ++ DG S ++ V
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAV 664
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 178 CKLWPLG*LRRSRTCARPSRGSVSWRAAGADGERGHREYERYHPMPHNWFYK 23
C W G S T RP+ S ++G G R+ ER +P+P + +K
Sbjct: 634 CAAWSAG----SLTDHRPASPSPICSPVSSNGGEGCRDVERTNPVPPRFIHK 681
>02_01_0055 +
410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 336 GRYQMQVELCNSDGCSSSEGIEIVVADTDGSHLRPLDYSIGEKINP--SSKLREK 494
G QM EL + D +S+EG+ I V D D L+ E I+P S KL E+
Sbjct: 260 GAMQMGGELDDDDMQNSNEGLTINVQDIDAYWLQRKVSQAYEDIDPQHSQKLAEE 314
>12_02_0807 -
23341971-23342153,23342300-23342397,23342451-23342521,
23342522-23342634,23342853-23342943,23343037-23343272,
23343915-23343959,23344113-23344226,23344306-23344369,
23345036-23345059,23345320-23345483,23345598-23345795
Length = 466
Score = 27.1 bits (57), Expect = 8.7
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -1
Query: 356 DLHLVSSALLHFESGRCGAAGTAPDFLLIEQDSGLSAASPVHTFQLTETSAASFLVTSWL 177
DLH++S+A L S C AA + E D G + ++T T S A+ V +WL
Sbjct: 39 DLHVLSAAFLFVFSAYC-AAQNLESSVNTEGDLGTVSMGILYT-SFTLFSVAASPVVTWL 96
Query: 176 *AVAAWLTST 147
+ A + T
Sbjct: 97 GSKRALVVGT 106
>03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321
Length = 90
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 106 WRAAGADGERGHREYERYHPMPHNWFYKK 20
WRA G RG Y + P PH +++
Sbjct: 41 WRAIGVQQSRGWVHYAIHRPEPHIMLFRR 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,120
Number of Sequences: 37544
Number of extensions: 247385
Number of successful extensions: 800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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