Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0061
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   30   0.95 
SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_6397| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_58859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 324 VKKGGRYQMQVELCNSDGCSSSEGIEIVVADTDGSH 431
           V  G  YQ+ V+ CNS GC  S     V  D  G +
Sbjct: 275 VLPGTTYQISVQACNSAGCGESSRAVNVTTDKKGDN 310


>SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/95 (21%), Positives = 41/95 (43%)
 Frame = -1

Query: 464 FLTNRIIERPQMATISVSYYDFDALARAASV*VAELDLHLVSSALLHFESGRCGAAGTAP 285
           FL  R+  +  + T  + Y   DA   A    V   D  +  + L  + +      G +P
Sbjct: 325 FLYERLWFKQNICTADIKY-GIDAEPAARDAYVKATDNTVTETGL--WINKMYPHLGASP 381

Query: 284 DFLLIEQDSGLSAASPVHTFQLTETSAASFLVTSW 180
           D L+++++SG +    +   +L +T     +++ W
Sbjct: 382 DGLVVDKESGTAGILEIKCLKLLKTRTVEEVISGW 416


>SB_6397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +1

Query: 118 LGWGERTFAIVEVNQAATAYNQLVTKKDAADVSVNWNVWTGDAADNPESCSIRRKSGAVP 297
           L  G R+FA  E   A T      T  D A    +   W     DNP   SIR  + A+ 
Sbjct: 40  LNRGIRSFAESEYVAAPTCVKAGETWNDMARFDTSLFSWLNSFWDNPREESIRNSTSAMA 99

Query: 298 AAPH 309
           +  H
Sbjct: 100 SDGH 103


>SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 296 GTAPDFLLIEQDSGLSAASPVHTFQLTETSAASFLVTSW 180
           G +PD L+++++SG +    +   +L +T     +++ W
Sbjct: 459 GASPDGLVVDKESGTAGILEIKCLKLLKTRTVEEVISGW 497


>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -2

Query: 430 WLPSVSATTISMPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPL 287
           W  S++   + +  ++ +PS L   TCI+ + P +++  + V    P+
Sbjct: 160 WGYSLAFALVPITGVKHYPSSLYQGTCIFNMAPIYSVVGSFVNFVLPM 207


>SB_58859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
 Frame = +3

Query: 282 VWSGAGSATSAAFKVKKGGRYQMQVEL---CNSDGCSSSEGIEIVVADTDGSHLRPLDYS 452
           ++ G G+  S  F     G     ++L   C   G   +      +    G  L  LD+ 
Sbjct: 97  LYDGGGNYHSIVFHAYDSGFDTTNLDLYIDCKLMGRKQTLSPITSIFSYKGISLSRLDFR 156

Query: 453 IGEKINPSSKLREKW 497
           IG++  P   +R KW
Sbjct: 157 IGQRRGPQGSVRNKW 171


>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1963

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 339 RYQMQVELCNSDGCS 383
           RY++++++CNS GCS
Sbjct: 628 RYEVEMKMCNSAGCS 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,906
Number of Sequences: 59808
Number of extensions: 249013
Number of successful extensions: 629
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)