Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0061
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF022975-9|AAB70669.1|  344|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated...    27   5.9  
AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated...    27   5.9  
AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated...    27   5.9  

>AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical
           protein H10D18.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 148 VEVNQAATAYNQLVTKKDAADVSVNWNVWTGDAADNPE 261
           +E+++   AY Q+++ K  +D ++ WN++  D  +N E
Sbjct: 3   LEISEKIKAYRQVMSAKSPSDAALTWNLF--DLPNNME 38


>AF022975-9|AAB70669.1|  344|Caenorhabditis elegans Hypothetical
           protein K09C6.2 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 363 CNSDGCSSSEGIEIVVADTDGSHLRPLDYSIGEKINPSS 479
           C+   C S + ++ V A +    +   D  IGEK  PSS
Sbjct: 136 CSGSDCFSDKDLDAVSASSSSHLISEEDAEIGEKKEPSS 174


>AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated
           protein 23, isoform b protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 326 HFESGRCGAAGTAPDFLLIEQDSGLSAASPVHTFQLTETSAASFLVTSWL 177
           +F SG    +   PDF    +D GLS   P+  ++ + T  ++   TS L
Sbjct: 42  NFPSGFSNGSSNFPDFPRFGRDGGLSPNPPMQGYRRSPTPTSTQSPTSTL 91


>AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated
           protein 23, isoform c protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 326 HFESGRCGAAGTAPDFLLIEQDSGLSAASPVHTFQLTETSAASFLVTSWL 177
           +F SG    +   PDF    +D GLS   P+  ++ + T  ++   TS L
Sbjct: 100 NFPSGFSNGSSNFPDFPRFGRDGGLSPNPPMQGYRRSPTPTSTQSPTSTL 149


>AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated
           protein 23, isoform a protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 326 HFESGRCGAAGTAPDFLLIEQDSGLSAASPVHTFQLTETSAASFLVTSWL 177
           +F SG    +   PDF    +D GLS   P+  ++ + T  ++   TS L
Sbjct: 101 NFPSGFSNGSSNFPDFPRFGRDGGLSPNPPMQGYRRSPTPTSTQSPTSTL 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,366,907
Number of Sequences: 27780
Number of extensions: 179667
Number of successful extensions: 483
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)